Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0453.Seq
         (299 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    25   0.20 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.35 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   0.35 
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    24   0.46 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   0.61 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   1.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   1.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   1.9  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   4.3  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   4.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    20   5.7  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    20   5.7  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    20   5.7  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    20   5.7  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    20   7.6  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    20   7.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    20   7.6  

>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 25.0 bits (52), Expect = 0.20
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 234 RDIPAPSTLCTSRTPRDTPSP 172
           RD+P  ST  T+   RDT +P
Sbjct: 137 RDLPGKSTTTTAEVKRDTINP 157


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 0.35
 Identities = 11/44 (25%), Positives = 16/44 (36%)
 Frame = -1

Query: 203  HQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 72
            H G  G  + H      H+R G + +     R    P    G+G
Sbjct: 1755 HSGTMGPPVGHPTNASAHSRSGSQSMPRQNGRYSRVPSQGGGSG 1798



 Score = 20.6 bits (41), Expect = 4.3
 Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
 Frame = -1

Query: 254  GHHRVPRETSRLLRHCAHQGLHGTH--LRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRR 81
            G   +PR+  R  R  +  G  GTH     E +   +     +       + G P  H  
Sbjct: 1776 GSQSMPRQNGRYSRVPSQGGGSGTHNVFSPEYDDPANCAPEEDQYGSQYGQYGAPYDHYG 1835

Query: 80   GAGQAHRSQGRRAVG 36
              G    S GRR+VG
Sbjct: 1836 SRG----SVGRRSVG 1846


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 0.35
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
 Frame = -1

Query: 203 HQGLHGT-HLRHEVEQRVHNRQGHEGVHL---AAARQGHPPHH 87
           H  +H T H  H      H++      H    AA + GH PHH
Sbjct: 423 HSHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHH 465


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 0.46
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 234 RDIPAPSTLCTSRTPRDTPSP 172
           RD+P  ST  T    RDT +P
Sbjct: 137 RDLPGKSTTTTVEVKRDTINP 157


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 0.61
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 179 LRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRR 45
           ++ E  QR H+ Q H     + A Q H   +++   Q  R Q R+
Sbjct: 133 IKQETLQRHHHLQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQRQ 177



 Score = 20.6 bits (41), Expect = 4.3
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = -1

Query: 176  RHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQ 69
            + + +Q+ H  +  EGV    A       + RGA Q
Sbjct: 1226 QQQQQQQQHQAREREGVGAGIAETSAGTSNSRGAAQ 1261


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 261 GRGAPSCPARDIPAPSTLCTSRTPRDTPSPRG 166
           G  +P  P    P+P+  C S T     SP+G
Sbjct: 734 GEASPRSPNAS-PSPAEQCASTTTITARSPQG 764



 Score = 20.2 bits (40), Expect = 5.7
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 137 ALADYEHVVQPRGEGVSRGVL 199
           +L +Y HV  P G   S   L
Sbjct: 506 SLTEYHHVAPPSGHHASSAPL 526


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 200 DVHNVEGAGMSLAGHD 247
           DVH V GAG  +  HD
Sbjct: 110 DVHGVIGAGHWIGDHD 125


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = -2

Query: 223 GSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPR 110
           G F  VH+   T   F T    +  + +  + YI L R
Sbjct: 271 GDFQPVHVHKQTAIAFRTPTYRMQQVEQPVQVYIQLKR 308


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = -2

Query: 223 GSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPR 110
           G F  VH+   T   F T    +  + +  + YI L R
Sbjct: 271 GDFQPVHVHKQTAIAFRTPTYRMQQVEQPVQVYIQLKR 308


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 20.6 bits (41), Expect = 4.3
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +1

Query: 124 CTPSCPCRL 150
           C P C CRL
Sbjct: 67  CAPGCVCRL 75


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 20.6 bits (41), Expect = 4.3
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +1

Query: 124 CTPSCPCRL 150
           C P C CRL
Sbjct: 67  CAPGCVCRL 75


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 110 RQGHPPHHRRGAG 72
           RQG P HH   AG
Sbjct: 58  RQGVPGHHYGAAG 70


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 112 RGKGIRLTIAEERDKR 65
           RGK I L   EE DKR
Sbjct: 190 RGKKIILDALEELDKR 205


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 112 RGKGIRLTIAEERDKR 65
           RGK I L   EE DKR
Sbjct: 190 RGKKIILDALEELDKR 205


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 112 RGKGIRLTIAEERDKR 65
           RGK I L   EE DKR
Sbjct: 190 RGKKIILDALEELDKR 205


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
          protein.
          Length = 157

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 43 ARRPWLRCACP 75
          ++ P L CACP
Sbjct: 55 SKSPLLSCACP 65


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
          protein.
          Length = 128

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 43 ARRPWLRCACP 75
          ++ P L CACP
Sbjct: 55 SKSPLLSCACP 65


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = -1

Query: 188 GTHLRHEVEQRVHNRQGHEGVHLAAARQG 102
           G H  H V  R   ++G E V L     G
Sbjct: 351 GNHDNHRVASRFGRQRGDEIVMLTLTLPG 379


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,529
Number of Sequences: 438
Number of extensions: 2104
Number of successful extensions: 24
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)