Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0453.Seq
(299 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso... 100 2e-22
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) 100 2e-22
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai... 100 2e-22
At1g67870.1 68414.m07750 glycine-rich protein contains non-conse... 35 0.009
At5g16910.1 68418.m01982 cellulose synthase family protein simil... 30 0.25
At3g03050.1 68416.m00301 cellulose synthase family protein (CslD... 30 0.33
At1g02730.1 68414.m00226 cellulose synthase family protein simil... 29 0.58
At4g38190.1 68417.m05391 cellulose synthase family protein simil... 29 0.76
At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3 d... 29 0.76
At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical... 27 1.8
At3g45570.1 68416.m04922 zinc finger (C3HC4-type RING finger) fa... 27 1.8
At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger) fa... 27 2.3
At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger) fa... 27 2.3
At5g11040.1 68418.m01290 expressed protein weak similarity to hy... 27 3.1
At3g63100.1 68416.m07087 glycine-rich protein 27 3.1
At3g45555.1 68416.m04920 zinc finger (C3HC4-type RING finger) fa... 27 3.1
At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating]... 26 4.1
At2g26130.1 68415.m03135 zinc finger (C3HC4-type RING finger) fa... 26 4.1
At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating]... 26 4.1
At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative simi... 26 5.4
At3g61030.1 68416.m06828 C2 domain-containing protein similar to... 26 5.4
At3g60950.1 68416.m06819 C2 domain-containing protein similar to... 26 5.4
At2g40760.1 68415.m05028 rhodanese-like domain-containing protei... 26 5.4
At2g32540.1 68415.m03975 cellulose synthase family protein simil... 26 5.4
At1g80600.1 68414.m09457 acetylornithine aminotransferase, mitoc... 26 5.4
At5g07040.1 68418.m00797 zinc finger (C3HC4-type RING finger) fa... 25 7.1
At2g32620.1 68415.m03982 cellulose synthase family protein simil... 25 7.1
At2g32530.1 68415.m03974 cellulose synthase family protein simil... 25 7.1
At1g54440.1 68414.m06210 3'-5' exonuclease domain-containing pro... 25 7.1
At1g02580.1 68414.m00209 maternal embryogenesis control protein ... 25 7.1
At4g15320.1 68417.m02344 cellulose synthase family protein simil... 25 9.4
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ... 25 9.4
At3g60230.1 68416.m06731 hypothetical protein 25 9.4
At3g56410.2 68416.m06274 expressed protein 25 9.4
At3g56410.1 68416.m06273 expressed protein 25 9.4
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 25 9.4
At3g50580.1 68416.m05532 proline-rich family protein contains pr... 25 9.4
At3g47950.1 68416.m05228 ATPase, plasma membrane-type, putative ... 25 9.4
At3g43750.1 68416.m04674 zinc finger (C3HC4-type RING finger) fa... 25 9.4
At3g28110.1 68416.m03508 hypothetical protein 25 9.4
At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) / polyc... 25 9.4
At1g35910.1 68414.m04460 trehalose-6-phosphate phosphatase, puta... 25 9.4
At1g12860.1 68414.m01494 basic helix-loop-helix (bHLH) family pr... 25 9.4
>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
protein S4, Arabidopsis thaliana, PIR:T48480
Length = 262
Score = 100 bits (239), Expect = 2e-22
Identities = 44/70 (62%), Positives = 57/70 (81%)
Frame = -2
Query: 262 GAWGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIA 83
G G I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK ++SLP+GKGI+LTI
Sbjct: 190 GRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTII 249
Query: 82 EERDKRIAAK 53
EE KR+A++
Sbjct: 250 EEARKRLASQ 259
>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
Length = 262
Score = 100 bits (239), Expect = 2e-22
Identities = 44/70 (62%), Positives = 57/70 (81%)
Frame = -2
Query: 262 GAWGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIA 83
G G I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK ++SLP+GKGI+LTI
Sbjct: 190 GRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTII 249
Query: 82 EERDKRIAAK 53
EE KR+A++
Sbjct: 250 EEARKRLASQ 259
>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
ribosomal protein S4 signature from residues 8 to 22
Length = 261
Score = 100 bits (239), Expect = 2e-22
Identities = 44/70 (62%), Positives = 57/70 (81%)
Frame = -2
Query: 262 GAWGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIA 83
G G I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK ++SLP+GKGI+LTI
Sbjct: 190 GRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTII 249
Query: 82 EERDKRIAAK 53
EE KR++A+
Sbjct: 250 EEARKRLSAQ 259
>At1g67870.1 68414.m07750 glycine-rich protein contains
non-consensus GG donor splice site at exon2; modeled to
est match.
Length = 279
Score = 35.1 bits (77), Expect = 0.009
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = -1
Query: 260 GVGHHRVPRETSRLLRHCAHQGLHGTHLR--HEVEQRVHNRQGHEGVHLAAARQGHPPHH 87
G+ HH + + HQG+HG + H ++ + + H+G+H + GH H
Sbjct: 135 GIQHHDIHGMQHQGGHGMQHQGMHGMQHQGGHGMQHQGGHGMQHQGMHGMQHQGGHGMEH 194
Query: 86 RRGAGQAHR 60
+ G G H+
Sbjct: 195 QGGHGMQHQ 203
Score = 31.9 bits (69), Expect = 0.082
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -1
Query: 203 HQGLHGT--HLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHR 60
HQG HG H H ++ + + H+G+H + GH H+ G G H+
Sbjct: 130 HQGGHGIQHHDIHGMQHQGGHGMQHQGMHGMQHQGGHGMQHQGGHGMQHQ 179
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -1
Query: 203 HQGLHGTHL--RHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAH 63
HQ +HG RH ++ + + H+G+H + GH H+ G H
Sbjct: 202 HQDMHGMQHQGRHGMQHQGGHEMQHQGMHGMQHQGGHRIQHQGMHGMQH 250
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = -1
Query: 203 HQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRRAV 39
HQG HG ++H Q +H Q H+G H + GH H+ G H QGR +
Sbjct: 170 HQGGHG--MQH---QGMHGMQ-HQGGHGMEHQGGHGMQHQDMHGMQH--QGRHGM 216
Score = 27.1 bits (57), Expect = 2.3
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -1
Query: 203 HQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGR 48
HQG HG ++H Q +H Q H+G H + GH H+ G H+ R
Sbjct: 194 HQGGHG--MQH---QDMHGMQ-HQGRHGMQHQGGHEMQHQGMHGMQHQGGHR 239
>At5g16910.1 68418.m01982 cellulose synthase family protein similar
to gi:2827143 cellulose synthase catalytic subunit,
Arabidopsis thaliana, gi:9622886 cellulose synthase-7
from Zea mays
Length = 1145
Score = 30.3 bits (65), Expect = 0.25
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 138 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCLSRDTMVPHAPSY 269
PL NT+ +++A PVE L C +S + G L + A S+
Sbjct: 395 PLVTANTILSILAAEYPVEKLSCYVSDDGGALLTFEAMAEAASF 438
>At3g03050.1 68416.m00301 cellulose synthase family protein (CslD3)
similar to cellulose synthase catalytic subunit
gi:2827143 from [Arabidopsis thaliana], cellulose
synthase-7 (gi:9622886) from Zea mays; contains Pfam
profile PF03552: Cellulose synthase
Length = 1145
Score = 29.9 bits (64), Expect = 0.33
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 138 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCLSRDTMVPHAPSY 269
PL NT+ +++A PVE L C +S + G L + A S+
Sbjct: 392 PLVTSNTILSILAADYPVEKLACYVSDDGGALLTFEAMAEAASF 435
>At1g02730.1 68414.m00226 cellulose synthase family protein similar
to cellulose synthase catalytic subunit [gi:13925881]
from Nicotiana alata, cellulose synthase-4 [gi:9622880]
from Zea mays
Length = 1181
Score = 29.1 bits (62), Expect = 0.58
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 138 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 233
PL NT+ +++A PVE L C +S + G L
Sbjct: 416 PLVTANTILSILAVDYPVEKLACYLSDDGGAL 447
>At4g38190.1 68417.m05391 cellulose synthase family protein similar
to cellulose synthase catalytic subunit gi:2827143 from
[Arabidopsis thaliana], cellulose synthase-5
(gi:9622882) from Zea mays
Length = 1111
Score = 28.7 bits (61), Expect = 0.76
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 138 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCLSRDTMVPHAPSY 269
PL NT+ +++A PVE + C +S + G L + A S+
Sbjct: 370 PLVTANTILSILAVDYPVEKVSCYLSDDGGALLSFEAMAEAASF 413
>At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3
domain-containing protein similar to eukaryotic protein
synthesis initiation factor [Homo sapiens] GI:3941724;
contains Pfam profiles PF02854: MIF4G domain, PF02847:
MA3 domain
Length = 1544
Score = 28.7 bits (61), Expect = 0.76
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 107 QGHPPHHRRGAGQAHRSQG 51
QGHPPH G H++QG
Sbjct: 132 QGHPPHPMHHQGMMHQAQG 150
>At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical to
UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1)
[Arabidopsis thaliana]; contains Pfam 00415: Regulator
of chromosome condensation (RCC1)
Length = 440
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -2
Query: 232 RHPGSFDIVHIKDSTGHTFA-TRLNNVFIIGKGTKAYISL 116
R P +V + HT A T NNVF G+GT + +
Sbjct: 323 RFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGI 362
>At3g45570.1 68416.m04922 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 312
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 18 KVYCP*PYCAATLAAMRLSRSS 83
+VYCP P C++ ++ +LS S+
Sbjct: 247 RVYCPNPLCSSLMSVTKLSNST 268
>At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain
PF01485: IBR domain
Length = 655
Score = 27.1 bits (57), Expect = 2.3
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 18 KVYCP*PYCAATLAAMRLSRSS 83
+VYCP P C+A ++ ++S S+
Sbjct: 384 RVYCPYPRCSALMSKTKISESA 405
>At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature
Length = 408
Score = 27.1 bits (57), Expect = 2.3
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 18 KVYCP*PYCAATLAAMRLSRSS 83
+VYCP P C++ ++ +LS S+
Sbjct: 257 RVYCPNPRCSSLMSVTKLSNST 278
>At5g11040.1 68418.m01290 expressed protein weak similarity to
hypercellular protein [Aspergillus nidulans] GI:9309269
Length = 1186
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 191 GVLDVHNVEGAGMSLAGHDGAPRPKLRPPVIIH 289
G D N +G + AG+ G P+ P ++IH
Sbjct: 776 GPTDSDNTMSSGRNAAGNTGRPKDGTSPSLLIH 808
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/55 (34%), Positives = 20/55 (36%)
Frame = -1
Query: 212 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGR 48
HC H HG H H GH+ H GH H G G HR GR
Sbjct: 70 HCDH--CHGHGYGHG-----HREHGHDRGH------GHGRGHGHGHGHGHRRHGR 111
>At3g45555.1 68416.m04920 zinc finger (C3HC4-type RING finger)
family protein low similarity to UbcM4-interacting
protein 4 [Mus musculus] GI:13991706; contains Pfam
profiles PF00097: Zinc finger C3HC4 type (RING finger),
PF01485: IBR (In Between Ring fingers) domain
Length = 213
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 18 KVYCP*PYCAATLAAMRLSRSS 83
+ YCP P C+A ++ + LS+S+
Sbjct: 101 RFYCPNPRCSALMSKIELSKST 122
>At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating],
putative / glycine decarboxylase, putative / glycine
cleavage system P-protein, putative strong similarity to
SP|P49361 Glycine dehydrogenase [decarboxylating] A,
mitochondrial precursor (EC 1.4.4.2) {Flaveria
pringlei}; contains Pfam profile PF02347: Glycine
cleavage system P-protein
Length = 1037
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +3
Query: 147 IMNTLFNLVAKVCPVESLMCTMSKEPGCLSRDTMVPHAPSYGLP*SY 287
+ N N V V + L T+ K PG D +V A +G+P Y
Sbjct: 300 VKNAHANGVKVVMATDLLALTVLKPPGEFGADIVVGSAQRFGVPMGY 346
>At2g26130.1 68415.m03135 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 398
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 18 KVYCP*PYCAATLAAMRLSRSSAMVRR 98
+VYCP P C+ ++ LS + VRR
Sbjct: 243 RVYCPNPRCSTLMSETELSGLNIGVRR 269
>At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating],
putative / glycine decarboxylase, putative / glycine
cleavage system P-protein, putative strong similarity to
SP|P26969 Glycine dehydrogenase [decarboxylating],
mitochondrial precursor (EC 1.4.4.2) {Pisum sativum};
contains Pfam profile PF02347: Glycine cleavage system
P-protein
Length = 1044
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +3
Query: 147 IMNTLFNLVAKVCPVESLMCTMSKEPGCLSRDTMVPHAPSYGLP*SY 287
+ N N V V + L TM K PG D +V +G+P Y
Sbjct: 306 VKNAHANGVKVVMATDLLALTMLKPPGEFGADIVVGSGQRFGVPMGY 352
>At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative similar
to SP|P39940 Ubiquitin--protein ligase RSP5 (EC 6.3.2.-)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00240: Ubiquitin family, PF00632: HECT-domain
(ubiquitin-transferase)
Length = 873
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +3
Query: 105 LPRGSEMYAFVPLPIMNTLFNLVAKVCPVESLMCTMSKEPGCLSRDTMVPH 257
LP+ + Y LPI+ L+ KVCP + L T G + PH
Sbjct: 264 LPKNQKNYC---LPIVLEFCKLLRKVCPDQKLYVTCRNTLGSMLETFDNPH 311
>At3g61030.1 68416.m06828 C2 domain-containing protein similar to
CLB1 [Lycopersicon esculentum] GI:2789434; contains Pfam
profile PF00168: C2 domain
Length = 592
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/46 (19%), Positives = 23/46 (50%)
Frame = +2
Query: 113 RQRDVRLRALADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDG 250
++ DV++ + D++ + PR + +G++ V+ S+ G
Sbjct: 337 KEEDVKICFMLDFDRAISPRNKKFQQGLMSNATVKSVPFSINNSKG 382
>At3g60950.1 68416.m06819 C2 domain-containing protein similar to
CLB1 [Lycopersicon esculentum] GI:2789434; contains Pfam
profile PF00168: C2 domain
Length = 592
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/46 (19%), Positives = 23/46 (50%)
Frame = +2
Query: 113 RQRDVRLRALADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDG 250
++ DV++ + D++ + PR + +G++ V+ S+ G
Sbjct: 337 KEEDVKICFMLDFDRAISPRNKKFQQGLMSNATVKSVPFSINNSKG 382
>At2g40760.1 68415.m05028 rhodanese-like domain-containing protein
contains rhodanese-like domain PF00581
Length = 474
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 116 QRDVRLRALADYEHVVQPRGEGVSRG 193
QRDVRL L E V P E + G
Sbjct: 164 QRDVRLNGLRQVETPVSPEQEAIHHG 189
>At2g32540.1 68415.m03975 cellulose synthase family protein similar
to cellulose synthase catalytic subunit from Arabidopsis
thaliana [gi:5230423], cellulose synthase-5 from Zea
mays [gi:9622882]
Length = 755
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 138 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGC 230
PL ++NT+ +L+A P L C +S + GC
Sbjct: 109 PLIVVNTVLSLLAVNYPANKLACYVS-DDGC 138
>At1g80600.1 68414.m09457 acetylornithine aminotransferase,
mitochondrial, putative / acetylornithine transaminase,
putative / AOTA, putative / ACOAT, putative similar to
SP|O04866 Acetylornithine aminotransferase,
mitochondrial precursor (EC 2.6.1.11) (ACOAT)
(Acetylornithine transaminase) (AOTA) {Alnus glutinosa};
contains Pfam profile PF00202: aminotransferase, class
III
Length = 457
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 119 RDVRLRALADYEHVVQPRGEGVSRGV-LDV 205
RD+ ++ L HV + RGEG+ GV LDV
Sbjct: 375 RDLLVKKLGGNSHVKEVRGEGLIIGVELDV 404
>At5g07040.1 68418.m00797 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 159
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = +1
Query: 109 RAAARCTPSCPCRL*TRCSTSWRRCVPWSP*CAQCRRSRDVSR 237
R RC P C T C W R S C CR S SR
Sbjct: 104 REPVRCIPECNHCFHTDCVDEWLRT---SATCPLCRNSPAPSR 143
>At2g32620.1 68415.m03982 cellulose synthase family protein similar
to Zea mays cellulose synthase-5 [gi:9622882], -4
[gi:9622880], -9 [gi:9622890]
Length = 757
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 138 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGC 230
P+ ++NT+ +L+A P L C +S + GC
Sbjct: 109 PIMVVNTVLSLLAVNYPANKLACYVS-DDGC 138
>At2g32530.1 68415.m03974 cellulose synthase family protein similar
to cellulose synthase catalytic subunit from Arabidopsis
thaliana [gi:5230423], cellulose synthase-5 from Zea
mays [gi:9622882]
Length = 755
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 138 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGC 230
P+ + NTL +L+A P L C +S + GC
Sbjct: 109 PILVANTLLSLLAVNYPANKLACYVS-DDGC 138
>At1g54440.1 68414.m06210 3'-5' exonuclease domain-containing
protein / helicase and RNase D C-terminal
domain-containing protein / HRDC domain-containing
protein similar to SP|Q01780 Polymyositis/scleroderma
autoantigen 2 {Homo sapiens}; contains Pfam profiles
PF00570: HRDC domain, PF01612: 3'-5' exonuclease
Length = 738
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 117 SEMYAFVPLPIMNTLFNLVAKVCPVESLMCTM 212
SEM PLP+ T F LV +V +E L +
Sbjct: 213 SEMRPVKPLPLEETPFKLVEEVKDLEDLAAAL 244
>At1g02580.1 68414.m00209 maternal embryogenesis control protein /
MEDEA (MEA) nearly identical to MEDEA GB:AAC39446
GI:3089625 from [Arabidopsis thaliana]; contains Pfam
profile PF00856: SET domain
Length = 689
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/27 (29%), Positives = 11/27 (40%)
Frame = +1
Query: 103 PCRAAARCTPSCPCRL*TRCSTSWRRC 183
PC ++C CPC C + C
Sbjct: 449 PCTCKSKCGQQCPCLTHENCCEKYCGC 475
>At4g15320.1 68417.m02344 cellulose synthase family protein similar
to Zea mays cellulose synthase-5 [gi:9622882], -2
[gi:9622876], -1 [gi:9622874]
Length = 828
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 138 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGC 230
P+ ++NT+ +L+A P L C +S + GC
Sbjct: 109 PIIVVNTVLSLLAVNYPANKLACYVS-DDGC 138
>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 387
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/42 (26%), Positives = 17/42 (40%)
Frame = -1
Query: 152 HNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRRAVGLRT 27
HN + + + + H G GQ H+ Q R +RT
Sbjct: 272 HNGNDRNEIDDGSDQDVYRKHASNGKGQTHKQQSRAKPNMRT 313
>At3g60230.1 68416.m06731 hypothetical protein
Length = 207
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = -1
Query: 149 NRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRRAVG 36
N QG + HP +H G RSQG VG
Sbjct: 72 NAQGGGQPRVNLPPVNHPNNHNNGPNAHSRSQGEPGVG 109
>At3g56410.2 68416.m06274 expressed protein
Length = 1535
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/33 (27%), Positives = 21/33 (63%)
Frame = -2
Query: 151 IIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 53
I+G+G+ + +P + R++ + E D+R+A +
Sbjct: 587 IVGEGSGESLEVPVNQNERMSESSEEDERVAER 619
>At3g56410.1 68416.m06273 expressed protein
Length = 1488
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/33 (27%), Positives = 21/33 (63%)
Frame = -2
Query: 151 IIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 53
I+G+G+ + +P + R++ + E D+R+A +
Sbjct: 540 IVGEGSGESLEVPVNQNERMSESSEEDERVAER 572
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 113 RQRDVRLRALADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAPR 259
R RDV ++ + PR +R LD + +G+ +++ GAPR
Sbjct: 36 RVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDFDGSRITVEASRGAPR 84
>At3g50580.1 68416.m05532 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 265
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 249 PSCPARDIPAPSTLCTSRTPRDTPSP 172
PS P+ PAP TP+ +PSP
Sbjct: 85 PSTPSPPPPAPKKSPPPPTPKKSPSP 110
>At3g47950.1 68416.m05228 ATPase, plasma membrane-type, putative /
proton pump, putative strong similarity to P-type
H(+)-transporting ATPase from Nicotiana plumbaginifolia
[SP|Q08435, SP|Q08436], Lycopersicon esculentum
[GI:5901757, SP|P22180], Solanum tuberosum [GI:435003];
contains InterPro accession IPR001757: ATPase, E1-E2
type
Length = 960
Score = 25.0 bits (52), Expect = 9.4
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = -1
Query: 230 TSRLLRHCAHQGLHGTHLRHEVEQRVH---NRQGHEGVH-LAAARQGHPPHHRRGAG 72
T R+ + Q L+ H + E+E+RVH ++ G+ LA A Q P + AG
Sbjct: 426 THRVSKGAPEQILNLAHNKSEIERRVHAVIDKFAERGLRSLAVAYQDVPEGRKDSAG 482
>At3g43750.1 68416.m04674 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 346
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 18 KVYCP*PYCAATLAAMRLSRSS 83
+VYCP P C+ ++ LS S+
Sbjct: 239 RVYCPNPRCSGLMSKTELSTST 260
>At3g28110.1 68416.m03508 hypothetical protein
Length = 354
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 239 PRETSRLLRHCAHQGLHGTHL 177
PRE +RLL C G H H+
Sbjct: 224 PREFTRLLASCTSTGTHVPHV 244
>At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) /
polycomb-group protein identical to polycomb group
[Arabidopsis thaliana] GI:1903019 (curly leaf); contains
Pfam profile PF00856: SET domain
Length = 902
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/27 (33%), Positives = 10/27 (37%)
Frame = +1
Query: 103 PCRAAARCTPSCPCRL*TRCSTSWRRC 183
PC C CPC L C + C
Sbjct: 654 PCNCKIACGKECPCLLNGTCCEKYCGC 680
>At1g35910.1 68414.m04460 trehalose-6-phosphate phosphatase,
putative similar to trehalose-6-phosphate phosphatase
(AtTPPB) [Arabidopsis thaliana] GI:2944180; contains
Pfam profile PF02358: Trehalose-phosphatase
Length = 369
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -2
Query: 202 IKDSTGHT-FATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRI 62
I D+ G A R+ N + G YIS+PR K ++ A+ RI
Sbjct: 8 ISDAKGSIGVAVRVPNQSLFSPGGGRYISIPRKKLVQKLEADPSQTRI 55
>At1g12860.1 68414.m01494 basic helix-loop-helix (bHLH) family
protein / F-box family protein contains Pfam profiles:
PF00646 F-box domain, PF00010 helix-loop-helix
DNA-binding domain
Length = 828
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 72 SRSSAMVRRMPLPRGSEMYAFVPLPIMNTLFNLVAKVCPVESLM 203
S S RR+P RG+E F P + N + + PV++++
Sbjct: 46 SLSQRKRRRIPRGRGNEKAVFAPSSLPNDVVEEIFLRLPVKAII 89
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,960,164
Number of Sequences: 28952
Number of extensions: 148157
Number of successful extensions: 539
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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