Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0451.Seq
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    30   0.29 
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   1.5  
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac...    27   2.0  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    26   3.5  
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...    26   4.7  
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    25   6.2  

>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 359 LHARTLRTPRYLMSWHSLINHNSLQLI 439
           LH  +L T RY MSW   + H +L+ I
Sbjct: 161 LHVGSLLTTRYAMSWEQSVYHEALEWI 187


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 585 RKGRREKKKMKSEQDEAEREKEKAE 511
           +K +  +KK+K +Q EA+REK   E
Sbjct: 666 QKQKEREKKLKKQQQEADREKMARE 690


>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -1

Query: 576 RREKKKMKSEQDEAEREKEKAENLXXXXXXXXXXXRLETQR 454
           +  K+K+K +++EA R+KE+ + +            LE Q+
Sbjct: 172 KEAKRKLKEKEEEARRQKEQQQGVVQVRQQKEYLKELERQK 212


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = -1

Query: 573 REKKKMKSEQDEAEREKEKAENL 505
           +E+++ K E+D+  REKE+A+ L
Sbjct: 138 QEQQRRKEERDQKLREKEEAQRL 160


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 399 DIKYLGVRSVRAWRILFLKPLVAQSSTIP 313
           D+K  GV   RA R+L L  +V   +T+P
Sbjct: 347 DVKSKGVDGARAERVLELINIVTNKNTVP 375


>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 230 LLTHNMSLQSVKFEPNTRTVLKTNDNSIGIV 322
           +L H     ++ F P T+ +L  +DN +G +
Sbjct: 73  VLQHGAGSSAMSFAPVTQELLSNSDNKVGFL 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,050,904
Number of Sequences: 5004
Number of extensions: 41802
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)