Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0451.Seq
         (588 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-26...    28   4.8  
01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769...    28   4.8  
04_04_1358 + 32869222-32869306,32869947-32870008,32870301-328703...    28   6.3  

>08_01_0036 -
           267236-268165,268255-268299,268485-268574,269485-269805,
           269895-270098,271532-271664,271810-271881,273106-273168,
           273252-275034,275169-275217
          Length = 1229

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 368 RTLRTPRYLMSWHSLINHNSLQLIVFLH 451
           R L T  +L++W + + H+SL +  FLH
Sbjct: 119 RLLPTASHLLAWRTALAHSSLAVCRFLH 146


>01_05_0199 -
           19174971-19175105,19176302-19176628,19176813-19176915,
           19178852-19178916,19179941-19180048,19180213-19180305,
           19180395-19180442,19180801-19180899,19180980-19181096,
           19181186-19181239,19181312-19181404,19181776-19181881,
           19182050-19182084,19182173-19182259,19182385-19182462,
           19182528-19182596,19182682-19182780,19183644-19183685,
           19184498-19184570,19184654-19184982,19185070-19185127,
           19185217-19185269,19186075-19186144,19186276-19186337,
           19186452-19186540,19186906-19187011,19187110-19187178,
           19187295-19187330
          Length = 900

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = -1

Query: 585 RKGRREKKKMKSEQDEAEREKEK 517
           ++ R+EK+K + E+ E ER+KEK
Sbjct: 757 KERRKEKEKKEKERKEKERDKEK 779


>04_04_1358 + 32869222-32869306,32869947-32870008,32870301-32870393,
            32870640-32870761,32873139-32873167,32873586-32873891,
            32873977-32874035,32874148-32874279,32874414-32874455,
            32874560-32875093,32875189-32875379,32875538-32876027,
            32876273-32876335,32876704-32876805,32876895-32877215,
            32877294-32877386,32877484-32877585,32877718-32877822,
            32877933-32878066,32878429-32878612,32879226-32879357,
            32879447-32879559,32879628-32879709,32880328-32881992
          Length = 1746

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 585  RKGRREKKKMKSEQDEAEREKEKAEN 508
            RKGRR K  +++ Q E   EKE  E+
Sbjct: 1186 RKGRRAKNNIRAHQGELVEEKESFEH 1211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,927,691
Number of Sequences: 37544
Number of extensions: 250770
Number of successful extensions: 805
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)