Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0451.Seq
(588 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.92
SB_35674| Best HMM Match : SH2 (HMM E-Value=0) 31 0.92
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 30 1.6
SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_22454| Best HMM Match : Ribosomal_L35p (HMM E-Value=4.5) 29 2.1
SB_28078| Best HMM Match : SGS (HMM E-Value=1.5) 29 3.7
SB_28255| Best HMM Match : Curto_V2 (HMM E-Value=0.79) 28 4.9
SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33) 28 4.9
SB_6974| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_50377| Best HMM Match : NICE-3 (HMM E-Value=1.3) 28 4.9
SB_10985| Best HMM Match : E-MAP-115 (HMM E-Value=5.5) 28 4.9
SB_50441| Best HMM Match : POR_N (HMM E-Value=3.5) 28 6.5
SB_40082| Best HMM Match : tRNA-synt_2 (HMM E-Value=8.1e-37) 28 6.5
SB_32504| Best HMM Match : TolA (HMM E-Value=0.52) 28 6.5
SB_4028| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_47093| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_38133| Best HMM Match : TolA (HMM E-Value=0.38) 27 8.6
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11) 27 8.6
>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1789
Score = 30.7 bits (66), Expect = 0.92
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -1
Query: 582 KGRREKKKMKSEQDEAEREKEKAEN 508
KG EK K +SE+D+ E EK+K E+
Sbjct: 1513 KGESEKDKGESEKDKGESEKDKGES 1537
Score = 30.7 bits (66), Expect = 0.92
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -1
Query: 582 KGRREKKKMKSEQDEAEREKEKAEN 508
KG EK K +SE+D+ E EK+K E+
Sbjct: 1520 KGESEKDKGESEKDKGESEKDKGES 1544
Score = 30.7 bits (66), Expect = 0.92
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -1
Query: 582 KGRREKKKMKSEQDEAEREKEKAEN 508
KG EK K +SE+D+ E EK+K E+
Sbjct: 1527 KGESEKDKGESEKDKGESEKDKGES 1551
Score = 30.7 bits (66), Expect = 0.92
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -1
Query: 582 KGRREKKKMKSEQDEAEREKEKAEN 508
KG EK K +SE+D+ E EKEK ++
Sbjct: 1534 KGESEKDKGESEKDKGESEKEKCQS 1558
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 588 SRKGRREKKKMKSEQDEAEREKEKAEN 508
+ K EK K +SE+D+ E EK+K E+
Sbjct: 1504 ANKSESEKGKGESEKDKGESEKDKGES 1530
>SB_35674| Best HMM Match : SH2 (HMM E-Value=0)
Length = 871
Score = 30.7 bits (66), Expect = 0.92
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -1
Query: 582 KGRREKKKMKSEQDEAEREKEKAEN 508
KG EK K +SE+D+ E EK+K E+
Sbjct: 92 KGESEKDKGESEKDKGESEKDKGES 116
Score = 30.7 bits (66), Expect = 0.92
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -1
Query: 582 KGRREKKKMKSEQDEAEREKEKAEN 508
KG EK K +SE+D+ E EK+K E+
Sbjct: 99 KGESEKDKGESEKDKGESEKDKGES 123
Score = 30.7 bits (66), Expect = 0.92
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -1
Query: 582 KGRREKKKMKSEQDEAEREKEKAEN 508
KG EK K +SE+D+ E EK+K E+
Sbjct: 106 KGESEKDKGESEKDKGESEKDKGES 130
Score = 30.7 bits (66), Expect = 0.92
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -1
Query: 582 KGRREKKKMKSEQDEAEREKEKAEN 508
KG EK K +SE+D+ E EKEK ++
Sbjct: 113 KGESEKDKGESEKDKGESEKEKCQS 137
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 588 SRKGRREKKKMKSEQDEAEREKEKAEN 508
+ K EK K +SE+D+ E EK+K E+
Sbjct: 83 ANKSESEKGKGESEKDKGESEKDKGES 109
>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1718
Score = 29.9 bits (64), Expect = 1.6
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Frame = +2
Query: 47 NNHNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHVHGYQYETTDT 226
N+ + TKH S C + LY + + + I + +N V + ++D
Sbjct: 109 NHSSETKH-SRESTCDVSPNLYSKPKQDEQKLLNDDNVDILIEAPQNDCVANEKGASSDV 167
Query: 227 YLLTHNMSLQ---SVKFEPNTRTVLKTNDNSIGIVEDCAT 337
+ +HNM + + E +++T DNS+GI+ D T
Sbjct: 168 EV-SHNMGNKLPVEISKESRNNVIVQTGDNSLGIINDNGT 206
>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 897
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = -2
Query: 116 ECKV--LLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCEMS 3
+C++ +LY+ I C S VLYD DC + L++ + C +S
Sbjct: 2 DCRLSCVLYDAIDCRLSCVLYDAIDCRLSCVLYVAIDCRLS 42
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 149 LLSVWHRVLGRECKVLLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCEMS 3
L SV + + +LY+ I C S+VLYD DC + L+ + C +S
Sbjct: 89 LSSVLYDAIDCRLSCVLYDAIDCRLSSVLYDAIDCRLSDVLYDAIDCRLS 138
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = -2
Query: 116 ECKV--LLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCEMS 3
+C++ +LY+ I C S+VLYD DC + L+ + C +S
Sbjct: 74 DCRLSSVLYDAIDCRLSSVLYDAIDCRLSCVLYDAIDCRLS 114
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 149 LLSVWHRVLGRECKVLLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCEMS 3
L SV + + +LY+ I C S+VLYD DC + L+ + C +S
Sbjct: 221 LSSVLYDAIDCRLSSVLYDAIDCRLSDVLYDAIDCRLSGVLYDAIDCRLS 270
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 149 LLSVWHRVLGRECKVLLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCEMS 3
L SV + + +LY+ I C S VLYD DC + L+ + C +S
Sbjct: 113 LSSVLYDAIDCRLSDVLYDAIDCRLSGVLYDAIDCRLSGVLYDAIDCRLS 162
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = -2
Query: 116 ECKV--LLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCEMS 3
+C++ +LY+ + C S+VLYD DC + L+ + C +S
Sbjct: 62 DCRLSCVLYDALDCRLSSVLYDAIDCRLSSVLYDAIDCRLS 102
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 149 LLSVWHRVLGRECKVLLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCEMS 3
L SV + + +LY+ I C S VLYD DC + L+ + C +S
Sbjct: 77 LSSVLYDAIDCRLSSVLYDAIDCRLSCVLYDAIDCRLSSVLYDAIDCRLS 126
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = -2
Query: 116 ECKV--LLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCEMS 3
+C++ +LY+ + C S+VLYD DC + L+ + C +S
Sbjct: 206 DCRLSCVLYDALDCRLSSVLYDAIDCRLSSVLYDAIDCRLS 246
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = -2
Query: 116 ECKV--LLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCEMS 3
+C++ +LY+ I C S VLYD DC + L+ + C +S
Sbjct: 50 DCRLSCVLYDAIDCRLSCVLYDALDCRLSSVLYDAIDCRLS 90
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = -2
Query: 116 ECKV--LLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCEMS 3
+C++ +LY+ I C S VLYD DC + L+ + C +S
Sbjct: 194 DCRLSCVLYDAIDCRLSCVLYDALDCRLSSVLYDAIDCRLS 234
>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1137
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 582 KGRREKKKMKSEQDEAEREKEKAE 511
K + +KKMK EQDE ER+K + E
Sbjct: 1032 KTKEGEKKMKDEQDEIERKKAEEE 1055
>SB_22454| Best HMM Match : Ribosomal_L35p (HMM E-Value=4.5)
Length = 214
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 97 YSKTLHSRPSTRCQTDNKTLNNYIHQF*A*SPCTRISVRNNGHIF--TYTQHVPTIGKIR 270
Y+ TLH P+T + N+ LNN I P ++ + N GH F +H P K+R
Sbjct: 43 YNYTLHYEPNTTSKRKNRQLNNIIWYN---PPFSKNTSTNIGHRFLSLIDKHFPKDHKLR 99
>SB_28078| Best HMM Match : SGS (HMM E-Value=1.5)
Length = 934
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 310 YWNCRRLRNERF*KKNSPRTHTTYPEVLNVLALTN*SQQPTAHRVPP 450
YWN R R+ R + +SPR T + +T+ S P PP
Sbjct: 107 YWNSGR-RSPRHSRPSSPRCRTPRNNIFTTPMITSTSASPRGSMAPP 152
>SB_28255| Best HMM Match : Curto_V2 (HMM E-Value=0.79)
Length = 364
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 269 EPNTRTVLKTNDNS-IGIVEDCATRGFKKRILHA 367
EP T+ +T DNS I I EDC+T K I A
Sbjct: 119 EPERLTIKETRDNSVISIEEDCSTDAEMKVIYDA 152
>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
Length = 693
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = -1
Query: 585 RKGRREKKKMKSEQD-EAEREKEK 517
R+ REK+K K E+D E E+EKEK
Sbjct: 625 REKEREKEKEKEERDKEREKEKEK 648
>SB_6974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +1
Query: 97 YSKTLHSRPSTRCQTDNKTLNNYIHQF*A*SPCTRISVRNNGHIF--TYTQHVPTIGKIR 270
Y+ TLH P+T + N+ NN I P ++ + N GH F QH P K+R
Sbjct: 51 YNYTLHYEPNTTNKLKNRQCNNIIWYN---PPFSKNTSTNIGHRFFSLIDQHFPKDHKLR 107
>SB_50377| Best HMM Match : NICE-3 (HMM E-Value=1.3)
Length = 580
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +2
Query: 131 GARPITKH*IITYINSERNPHVHGYQY-ETTDTYLLTHNMSLQSVKFEPNTRTVLKTNDN 307
GA + I Y ++ V GY+ + D +L+ N+ + + N+ ++ +ND
Sbjct: 131 GANSKKQKSIPQYFRKQKRREVVGYKRGDELDKNILSKNIYID---IKENSGSIQISNDA 187
Query: 308 SIGIVEDCATRGFKKRILHARTLRT 382
S +EDC T G + H + +
Sbjct: 188 SKEDLEDCVTDGRSRNTYHINIMNS 212
>SB_10985| Best HMM Match : E-MAP-115 (HMM E-Value=5.5)
Length = 320
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 269 EPNTRTVLKTNDNS-IGIVEDCATRGFKKRILHA 367
EP T+ +T DNS I I EDC+T K I A
Sbjct: 33 EPERLTIKETRDNSAISIEEDCSTDAEMKVIYDA 66
>SB_50441| Best HMM Match : POR_N (HMM E-Value=3.5)
Length = 439
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +1
Query: 97 YSKTLHSRPSTRCQTDNKTLNNYIHQF*A*SPCTRISVRNNGHIF--TYTQHVPTIGKIR 270
Y+ TLH P+T + N+ NN I P ++ + N GH F +H P K+R
Sbjct: 347 YNYTLHYEPNTTSKRKNRQRNNIIWYN---PPFSKYTSTNIGHRFLSLIDKHFPKDHKLR 403
>SB_40082| Best HMM Match : tRNA-synt_2 (HMM E-Value=8.1e-37)
Length = 479
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -1
Query: 567 KKKMKSEQDEAEREKEKAE 511
KK MK + EAE+EK+KAE
Sbjct: 150 KKAMKKMEKEAEKEKKKAE 168
>SB_32504| Best HMM Match : TolA (HMM E-Value=0.52)
Length = 422
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 585 RKGRREKKKMKSEQDEAEREKEK 517
R + EK K K+ ++E EREKEK
Sbjct: 144 RMKKEEKHKEKTRKEEKEREKEK 166
>SB_4028| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 237
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = -1
Query: 585 RKGRREKKKMKSEQDEAE--REKEKAE 511
+K +++KKK K E+DE E + KEK E
Sbjct: 200 KKKKKKKKKKKEEEDEKEDKQRKEKTE 226
>SB_47093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +1
Query: 97 YSKTLHSRPSTRCQTDNKTLNNYIHQF*A*SPCTRISVRNNGHIF--TYTQHVPTIGKIR 270
Y+ TLH P+T + N+ NN I P ++ + N GH F +H P K+R
Sbjct: 200 YNYTLHYEPNTTSKHKNRQRNNIIWYN---PPFSKNTSTNIGHRFLSLIDKHFPKDHKLR 256
Query: 271 AKHT 282
T
Sbjct: 257 KTST 260
>SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)
Length = 2114
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -1
Query: 585 RKGRREKKKMKSEQDEAEREKEKAEN 508
+K +++KKK + EQ+E ER +++ N
Sbjct: 1943 KKTKKKKKKEEEEQEEDERRRKEIHN 1968
>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 950
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 573 REKKKMKSEQDEAEREKEKAEN 508
+EKKK ++DE E E E+ EN
Sbjct: 892 KEKKKKSGKEDEDEEEDEEEEN 913
>SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -1
Query: 582 KGRREKKKMKSEQDEAEREKEKAE 511
K RRE+++ + E++E E EKE+ E
Sbjct: 401 KRRREEEEEEEEEEEEEEEKEEEE 424
>SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)
Length = 1214
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -2
Query: 113 CKVLLYNNIRCS--SSNVLYDCDCYCTVNLFLILSCEM 6
C V+LY + C S VL C C V L+ ++SC +
Sbjct: 294 CLVVLYRVVSCRVVSCRVLSCCIVSCLVVLYRVVSCRV 331
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,000,139
Number of Sequences: 59808
Number of extensions: 347374
Number of successful extensions: 1317
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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