BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0451.Seq (588 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.92 SB_35674| Best HMM Match : SH2 (HMM E-Value=0) 31 0.92 SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6 SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 30 1.6 SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6 SB_22454| Best HMM Match : Ribosomal_L35p (HMM E-Value=4.5) 29 2.1 SB_28078| Best HMM Match : SGS (HMM E-Value=1.5) 29 3.7 SB_28255| Best HMM Match : Curto_V2 (HMM E-Value=0.79) 28 4.9 SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33) 28 4.9 SB_6974| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9 SB_50377| Best HMM Match : NICE-3 (HMM E-Value=1.3) 28 4.9 SB_10985| Best HMM Match : E-MAP-115 (HMM E-Value=5.5) 28 4.9 SB_50441| Best HMM Match : POR_N (HMM E-Value=3.5) 28 6.5 SB_40082| Best HMM Match : tRNA-synt_2 (HMM E-Value=8.1e-37) 28 6.5 SB_32504| Best HMM Match : TolA (HMM E-Value=0.52) 28 6.5 SB_4028| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5 SB_47093| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6 SB_38133| Best HMM Match : TolA (HMM E-Value=0.38) 27 8.6 SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6 SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6 SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11) 27 8.6 >SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1789 Score = 30.7 bits (66), Expect = 0.92 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = -1 Query: 582 KGRREKKKMKSEQDEAEREKEKAEN 508 KG EK K +SE+D+ E EK+K E+ Sbjct: 1513 KGESEKDKGESEKDKGESEKDKGES 1537 Score = 30.7 bits (66), Expect = 0.92 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = -1 Query: 582 KGRREKKKMKSEQDEAEREKEKAEN 508 KG EK K +SE+D+ E EK+K E+ Sbjct: 1520 KGESEKDKGESEKDKGESEKDKGES 1544 Score = 30.7 bits (66), Expect = 0.92 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = -1 Query: 582 KGRREKKKMKSEQDEAEREKEKAEN 508 KG EK K +SE+D+ E EK+K E+ Sbjct: 1527 KGESEKDKGESEKDKGESEKDKGES 1551 Score = 30.7 bits (66), Expect = 0.92 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = -1 Query: 582 KGRREKKKMKSEQDEAEREKEKAEN 508 KG EK K +SE+D+ E EKEK ++ Sbjct: 1534 KGESEKDKGESEKDKGESEKEKCQS 1558 Score = 28.3 bits (60), Expect = 4.9 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = -1 Query: 588 SRKGRREKKKMKSEQDEAEREKEKAEN 508 + K EK K +SE+D+ E EK+K E+ Sbjct: 1504 ANKSESEKGKGESEKDKGESEKDKGES 1530 >SB_35674| Best HMM Match : SH2 (HMM E-Value=0) Length = 871 Score = 30.7 bits (66), Expect = 0.92 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = -1 Query: 582 KGRREKKKMKSEQDEAEREKEKAEN 508 KG EK K +SE+D+ E EK+K E+ Sbjct: 92 KGESEKDKGESEKDKGESEKDKGES 116 Score = 30.7 bits (66), Expect = 0.92 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = -1 Query: 582 KGRREKKKMKSEQDEAEREKEKAEN 508 KG EK K +SE+D+ E EK+K E+ Sbjct: 99 KGESEKDKGESEKDKGESEKDKGES 123 Score = 30.7 bits (66), Expect = 0.92 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = -1 Query: 582 KGRREKKKMKSEQDEAEREKEKAEN 508 KG EK K +SE+D+ E EK+K E+ Sbjct: 106 KGESEKDKGESEKDKGESEKDKGES 130 Score = 30.7 bits (66), Expect = 0.92 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = -1 Query: 582 KGRREKKKMKSEQDEAEREKEKAEN 508 KG EK K +SE+D+ E EKEK ++ Sbjct: 113 KGESEKDKGESEKDKGESEKEKCQS 137 Score = 28.3 bits (60), Expect = 4.9 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = -1 Query: 588 SRKGRREKKKMKSEQDEAEREKEKAEN 508 + K EK K +SE+D+ E EK+K E+ Sbjct: 83 ANKSESEKGKGESEKDKGESEKDKGES 109 >SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1718 Score = 29.9 bits (64), Expect = 1.6 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 3/100 (3%) Frame = +2 Query: 47 NNHNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHVHGYQYETTDT 226 N+ + TKH S C + LY + + + I + +N V + ++D Sbjct: 109 NHSSETKH-SRESTCDVSPNLYSKPKQDEQKLLNDDNVDILIEAPQNDCVANEKGASSDV 167 Query: 227 YLLTHNMSLQ---SVKFEPNTRTVLKTNDNSIGIVEDCAT 337 + +HNM + + E +++T DNS+GI+ D T Sbjct: 168 EV-SHNMGNKLPVEISKESRNNVIVQTGDNSLGIINDNGT 206 >SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0) Length = 897 Score = 29.9 bits (64), Expect = 1.6 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%) Frame = -2 Query: 116 ECKV--LLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCEMS 3 +C++ +LY+ I C S VLYD DC + L++ + C +S Sbjct: 2 DCRLSCVLYDAIDCRLSCVLYDAIDCRLSCVLYVAIDCRLS 42 Score = 29.9 bits (64), Expect = 1.6 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -2 Query: 149 LLSVWHRVLGRECKVLLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCEMS 3 L SV + + +LY+ I C S+VLYD DC + L+ + C +S Sbjct: 89 LSSVLYDAIDCRLSCVLYDAIDCRLSSVLYDAIDCRLSDVLYDAIDCRLS 138 Score = 29.5 bits (63), Expect = 2.1 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%) Frame = -2 Query: 116 ECKV--LLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCEMS 3 +C++ +LY+ I C S+VLYD DC + L+ + C +S Sbjct: 74 DCRLSSVLYDAIDCRLSSVLYDAIDCRLSCVLYDAIDCRLS 114 Score = 29.5 bits (63), Expect = 2.1 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -2 Query: 149 LLSVWHRVLGRECKVLLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCEMS 3 L SV + + +LY+ I C S+VLYD DC + L+ + C +S Sbjct: 221 LSSVLYDAIDCRLSSVLYDAIDCRLSDVLYDAIDCRLSGVLYDAIDCRLS 270 Score = 28.7 bits (61), Expect = 3.7 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Frame = -2 Query: 149 LLSVWHRVLGRECKVLLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCEMS 3 L SV + + +LY+ I C S VLYD DC + L+ + C +S Sbjct: 113 LSSVLYDAIDCRLSDVLYDAIDCRLSGVLYDAIDCRLSGVLYDAIDCRLS 162 Score = 28.3 bits (60), Expect = 4.9 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 3/41 (7%) Frame = -2 Query: 116 ECKV--LLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCEMS 3 +C++ +LY+ + C S+VLYD DC + L+ + C +S Sbjct: 62 DCRLSCVLYDALDCRLSSVLYDAIDCRLSSVLYDAIDCRLS 102 Score = 28.3 bits (60), Expect = 4.9 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Frame = -2 Query: 149 LLSVWHRVLGRECKVLLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCEMS 3 L SV + + +LY+ I C S VLYD DC + L+ + C +S Sbjct: 77 LSSVLYDAIDCRLSSVLYDAIDCRLSCVLYDAIDCRLSSVLYDAIDCRLS 126 Score = 28.3 bits (60), Expect = 4.9 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 3/41 (7%) Frame = -2 Query: 116 ECKV--LLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCEMS 3 +C++ +LY+ + C S+VLYD DC + L+ + C +S Sbjct: 206 DCRLSCVLYDALDCRLSSVLYDAIDCRLSSVLYDAIDCRLS 246 Score = 27.5 bits (58), Expect = 8.6 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%) Frame = -2 Query: 116 ECKV--LLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCEMS 3 +C++ +LY+ I C S VLYD DC + L+ + C +S Sbjct: 50 DCRLSCVLYDAIDCRLSCVLYDALDCRLSSVLYDAIDCRLS 90 Score = 27.5 bits (58), Expect = 8.6 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%) Frame = -2 Query: 116 ECKV--LLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCEMS 3 +C++ +LY+ I C S VLYD DC + L+ + C +S Sbjct: 194 DCRLSCVLYDAIDCRLSCVLYDALDCRLSSVLYDAIDCRLS 234 >SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1137 Score = 29.9 bits (64), Expect = 1.6 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -1 Query: 582 KGRREKKKMKSEQDEAEREKEKAE 511 K + +KKMK EQDE ER+K + E Sbjct: 1032 KTKEGEKKMKDEQDEIERKKAEEE 1055 >SB_22454| Best HMM Match : Ribosomal_L35p (HMM E-Value=4.5) Length = 214 Score = 29.5 bits (63), Expect = 2.1 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%) Frame = +1 Query: 97 YSKTLHSRPSTRCQTDNKTLNNYIHQF*A*SPCTRISVRNNGHIF--TYTQHVPTIGKIR 270 Y+ TLH P+T + N+ LNN I P ++ + N GH F +H P K+R Sbjct: 43 YNYTLHYEPNTTSKRKNRQLNNIIWYN---PPFSKNTSTNIGHRFLSLIDKHFPKDHKLR 99 >SB_28078| Best HMM Match : SGS (HMM E-Value=1.5) Length = 934 Score = 28.7 bits (61), Expect = 3.7 Identities = 15/47 (31%), Positives = 21/47 (44%) Frame = +1 Query: 310 YWNCRRLRNERF*KKNSPRTHTTYPEVLNVLALTN*SQQPTAHRVPP 450 YWN R R+ R + +SPR T + +T+ S P PP Sbjct: 107 YWNSGR-RSPRHSRPSSPRCRTPRNNIFTTPMITSTSASPRGSMAPP 152 >SB_28255| Best HMM Match : Curto_V2 (HMM E-Value=0.79) Length = 364 Score = 28.3 bits (60), Expect = 4.9 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +2 Query: 269 EPNTRTVLKTNDNS-IGIVEDCATRGFKKRILHA 367 EP T+ +T DNS I I EDC+T K I A Sbjct: 119 EPERLTIKETRDNSVISIEEDCSTDAEMKVIYDA 152 >SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33) Length = 693 Score = 28.3 bits (60), Expect = 4.9 Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%) Frame = -1 Query: 585 RKGRREKKKMKSEQD-EAEREKEK 517 R+ REK+K K E+D E E+EKEK Sbjct: 625 REKEREKEKEKEERDKEREKEKEK 648 >SB_6974| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 198 Score = 28.3 bits (60), Expect = 4.9 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Frame = +1 Query: 97 YSKTLHSRPSTRCQTDNKTLNNYIHQF*A*SPCTRISVRNNGHIF--TYTQHVPTIGKIR 270 Y+ TLH P+T + N+ NN I P ++ + N GH F QH P K+R Sbjct: 51 YNYTLHYEPNTTNKLKNRQCNNIIWYN---PPFSKNTSTNIGHRFFSLIDQHFPKDHKLR 107 >SB_50377| Best HMM Match : NICE-3 (HMM E-Value=1.3) Length = 580 Score = 28.3 bits (60), Expect = 4.9 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 1/85 (1%) Frame = +2 Query: 131 GARPITKH*IITYINSERNPHVHGYQY-ETTDTYLLTHNMSLQSVKFEPNTRTVLKTNDN 307 GA + I Y ++ V GY+ + D +L+ N+ + + N+ ++ +ND Sbjct: 131 GANSKKQKSIPQYFRKQKRREVVGYKRGDELDKNILSKNIYID---IKENSGSIQISNDA 187 Query: 308 SIGIVEDCATRGFKKRILHARTLRT 382 S +EDC T G + H + + Sbjct: 188 SKEDLEDCVTDGRSRNTYHINIMNS 212 >SB_10985| Best HMM Match : E-MAP-115 (HMM E-Value=5.5) Length = 320 Score = 28.3 bits (60), Expect = 4.9 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +2 Query: 269 EPNTRTVLKTNDNS-IGIVEDCATRGFKKRILHA 367 EP T+ +T DNS I I EDC+T K I A Sbjct: 33 EPERLTIKETRDNSAISIEEDCSTDAEMKVIYDA 66 >SB_50441| Best HMM Match : POR_N (HMM E-Value=3.5) Length = 439 Score = 27.9 bits (59), Expect = 6.5 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Frame = +1 Query: 97 YSKTLHSRPSTRCQTDNKTLNNYIHQF*A*SPCTRISVRNNGHIF--TYTQHVPTIGKIR 270 Y+ TLH P+T + N+ NN I P ++ + N GH F +H P K+R Sbjct: 347 YNYTLHYEPNTTSKRKNRQRNNIIWYN---PPFSKYTSTNIGHRFLSLIDKHFPKDHKLR 403 >SB_40082| Best HMM Match : tRNA-synt_2 (HMM E-Value=8.1e-37) Length = 479 Score = 27.9 bits (59), Expect = 6.5 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = -1 Query: 567 KKKMKSEQDEAEREKEKAE 511 KK MK + EAE+EK+KAE Sbjct: 150 KKAMKKMEKEAEKEKKKAE 168 >SB_32504| Best HMM Match : TolA (HMM E-Value=0.52) Length = 422 Score = 27.9 bits (59), Expect = 6.5 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -1 Query: 585 RKGRREKKKMKSEQDEAEREKEK 517 R + EK K K+ ++E EREKEK Sbjct: 144 RMKKEEKHKEKTRKEEKEREKEK 166 >SB_4028| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 237 Score = 27.9 bits (59), Expect = 6.5 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%) Frame = -1 Query: 585 RKGRREKKKMKSEQDEAE--REKEKAE 511 +K +++KKK K E+DE E + KEK E Sbjct: 200 KKKKKKKKKKKEEEDEKEDKQRKEKTE 226 >SB_47093| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 268 Score = 27.5 bits (58), Expect = 8.6 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = +1 Query: 97 YSKTLHSRPSTRCQTDNKTLNNYIHQF*A*SPCTRISVRNNGHIF--TYTQHVPTIGKIR 270 Y+ TLH P+T + N+ NN I P ++ + N GH F +H P K+R Sbjct: 200 YNYTLHYEPNTTSKHKNRQRNNIIWYN---PPFSKNTSTNIGHRFLSLIDKHFPKDHKLR 256 Query: 271 AKHT 282 T Sbjct: 257 KTST 260 >SB_38133| Best HMM Match : TolA (HMM E-Value=0.38) Length = 2114 Score = 27.5 bits (58), Expect = 8.6 Identities = 10/26 (38%), Positives = 19/26 (73%) Frame = -1 Query: 585 RKGRREKKKMKSEQDEAEREKEKAEN 508 +K +++KKK + EQ+E ER +++ N Sbjct: 1943 KKTKKKKKKEEEEQEEDERRRKEIHN 1968 >SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 950 Score = 27.5 bits (58), Expect = 8.6 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -1 Query: 573 REKKKMKSEQDEAEREKEKAEN 508 +EKKK ++DE E E E+ EN Sbjct: 892 KEKKKKSGKEDEDEEEDEEEEN 913 >SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 440 Score = 27.5 bits (58), Expect = 8.6 Identities = 11/24 (45%), Positives = 18/24 (75%) Frame = -1 Query: 582 KGRREKKKMKSEQDEAEREKEKAE 511 K RRE+++ + E++E E EKE+ E Sbjct: 401 KRRREEEEEEEEEEEEEEEKEEEE 424 >SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11) Length = 1214 Score = 27.5 bits (58), Expect = 8.6 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%) Frame = -2 Query: 113 CKVLLYNNIRCS--SSNVLYDCDCYCTVNLFLILSCEM 6 C V+LY + C S VL C C V L+ ++SC + Sbjct: 294 CLVVLYRVVSCRVVSCRVLSCCIVSCLVVLYRVVSCRV 331 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,000,139 Number of Sequences: 59808 Number of extensions: 347374 Number of successful extensions: 1317 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 1072 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1299 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1422302661 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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