Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0451.Seq
(588 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB065580-1|BAC05810.1| 346|Homo sapiens seven transmembrane hel... 32 1.3
AK129846-1|BAC85241.1| 236|Homo sapiens protein ( Homo sapiens ... 32 1.7
AL390294-1|CAH73142.1| 929|Homo sapiens TAF3 RNA polymerase II,... 30 7.0
AL353754-1|CAH73451.1| 929|Homo sapiens TAF3 RNA polymerase II,... 30 7.0
AL159172-1|CAI15661.1| 929|Homo sapiens TAF3 RNA polymerase II,... 30 7.0
AK123631-1|BAC85667.1| 207|Homo sapiens protein ( Homo sapiens ... 30 7.0
AK096940-1|BAC04906.1| 226|Homo sapiens protein ( Homo sapiens ... 30 7.0
BC032639-1|AAH32639.1| 1220|Homo sapiens eukaryotic translation ... 29 9.2
BC022260-1|AAH22260.1| 400|Homo sapiens Unknown (protein for IM... 29 9.2
BC006970-1|AAH06970.1| 363|Homo sapiens Unknown (protein for IM... 29 9.2
AL133563-1|CAB63717.1| 1132|Homo sapiens hypothetical protein pr... 29 9.2
AJ006776-1|CAB44357.1| 1220|Homo sapiens IF2 protein protein. 29 9.2
AF078035-1|AAD16006.1| 1220|Homo sapiens translation initiation ... 29 9.2
AC079447-4|AAX93258.1| 492|Homo sapiens unknown protein. 29 9.2
AB018284-1|BAA34461.2| 1222|Homo sapiens KIAA0741 protein protein. 29 9.2
>AB065580-1|BAC05810.1| 346|Homo sapiens seven transmembrane helix
receptor protein.
Length = 346
Score = 32.3 bits (70), Expect = 1.3
Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 5/110 (4%)
Frame = -3
Query: 373 CACVENSFFKTSRCAIFYNSNTIVICF*HCACVWLEFYRL*GHVVCK*ICVRCFVLISVY 194
C CV S S C Y + IC C C+ + V +CV V + V
Sbjct: 5 CDCV--SCVSVSVCLYLYVC--VCICVSVCVCICVSVCVCICVCVSVFVCVCICVCVCVC 60
Query: 193 MGITLRIDVCNYLMFCYRSGTVCWDVNVKFY-----CTITFDVVALMFCM 59
+ + + I VC YL C +VC V+V Y C + V++ C+
Sbjct: 61 VSMCVSISVCVYLCLCV-CVSVCVYVSVCMYLCVFLCVCVYVSVSVCLCV 109
>AK129846-1|BAC85241.1| 236|Homo sapiens protein ( Homo sapiens
cDNA FLJ26336 fis, clone HRT02842. ).
Length = 236
Score = 31.9 bits (69), Expect = 1.7
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = -3
Query: 352 FFKTSRCAIFYNSNTIVICF*HCACVWLEFYRL*GHVVCK*ICVRCFVLISVYMGITLRI 173
F T C + S IC C V++ + HV ICV ++ I VY+ I + I
Sbjct: 137 FICTHACICVFTSTHACICVFTCTHVYISVFTC-THVY---ICVFIYICIHVYIHIYICI 192
Query: 172 DVCNY 158
+C Y
Sbjct: 193 HICVY 197
>AL390294-1|CAH73142.1| 929|Homo sapiens TAF3 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 140kD
protein.
Length = 929
Score = 29.9 bits (64), Expect = 7.0
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -1
Query: 585 RKGRREKKKMKSEQDEAEREKEKAE 511
+K +++KK+ + E+ E EREKEK E
Sbjct: 705 KKEKKKKKEKEKEKKEKEREKEKRE 729
>AL353754-1|CAH73451.1| 929|Homo sapiens TAF3 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 140kD
protein.
Length = 929
Score = 29.9 bits (64), Expect = 7.0
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -1
Query: 585 RKGRREKKKMKSEQDEAEREKEKAE 511
+K +++KK+ + E+ E EREKEK E
Sbjct: 705 KKEKKKKKEKEKEKKEKEREKEKRE 729
>AL159172-1|CAI15661.1| 929|Homo sapiens TAF3 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 140kD
protein.
Length = 929
Score = 29.9 bits (64), Expect = 7.0
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -1
Query: 585 RKGRREKKKMKSEQDEAEREKEKAE 511
+K +++KK+ + E+ E EREKEK E
Sbjct: 705 KKEKKKKKEKEKEKKEKEREKEKRE 729
>AK123631-1|BAC85667.1| 207|Homo sapiens protein ( Homo sapiens
cDNA FLJ41637 fis, clone FEBRA1000030, weakly similar
to T-CELL RECEPTOR BETA CHAIN ANA 11. ).
Length = 207
Score = 29.9 bits (64), Expect = 7.0
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Frame = +2
Query: 38 LYNNNHNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*----IITYINSERNPHVHGY 205
L+ + H HT + I Y + H H + H ++T + H H +
Sbjct: 56 LHTHTHTHTLSLYWLISLYIHTHTHTHTHTHAVLYLPTHTHTHAVLTLAYLPIHTHTHTH 115
Query: 206 QYETTDTYLLTHNMSL 253
+ + T L TH +SL
Sbjct: 116 THTLSCTSLYTHTLSL 131
>AK096940-1|BAC04906.1| 226|Homo sapiens protein ( Homo sapiens
cDNA FLJ39621 fis, clone SMINT2001158. ).
Length = 226
Score = 29.9 bits (64), Expect = 7.0
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +2
Query: 41 YNNNHNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHVHGYQYETT 220
Y + HT H + Y H P H H T+I++ + H H + +T
Sbjct: 140 YTHTSTHT-HPLTFTHTYPITHPLTHTPTHTHTHALTH-SHTHIHTHMHSHTHPLTHTST 197
Query: 221 DTYLLTHNMSL 253
T+ THN+ L
Sbjct: 198 HTHPHTHNVWL 208
>BC032639-1|AAH32639.1| 1220|Homo sapiens eukaryotic translation
initiation factor 5B protein.
Length = 1220
Score = 29.5 bits (63), Expect = 9.2
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -1
Query: 582 KGRREKKKMKSEQDEAEREKEK 517
K +++KKK K E++E E+EK+K
Sbjct: 313 KKKKDKKKKKGEKEEKEKEKKK 334
>BC022260-1|AAH22260.1| 400|Homo sapiens Unknown (protein for
IMAGE:4804924) protein.
Length = 400
Score = 29.5 bits (63), Expect = 9.2
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -1
Query: 582 KGRREKKKMKSEQDEAEREKEK 517
K +++KKK K E++E E+EK+K
Sbjct: 313 KKKKDKKKKKGEKEEKEKEKKK 334
>BC006970-1|AAH06970.1| 363|Homo sapiens Unknown (protein for
IMAGE:4041983) protein.
Length = 363
Score = 29.5 bits (63), Expect = 9.2
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -1
Query: 582 KGRREKKKMKSEQDEAEREKEK 517
K +++KKK K E++E E+EK+K
Sbjct: 313 KKKKDKKKKKGEKEEKEKEKKK 334
>AL133563-1|CAB63717.1| 1132|Homo sapiens hypothetical protein
protein.
Length = 1132
Score = 29.5 bits (63), Expect = 9.2
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -1
Query: 582 KGRREKKKMKSEQDEAEREKEK 517
K +++KKK K E++E E+EK+K
Sbjct: 225 KKKKDKKKKKGEKEEKEKEKKK 246
>AJ006776-1|CAB44357.1| 1220|Homo sapiens IF2 protein protein.
Length = 1220
Score = 29.5 bits (63), Expect = 9.2
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -1
Query: 582 KGRREKKKMKSEQDEAEREKEK 517
K +++KKK K E++E E+EK+K
Sbjct: 313 KKKKDKKKKKGEKEEKEKEKKK 334
>AF078035-1|AAD16006.1| 1220|Homo sapiens translation initiation
factor IF2 protein.
Length = 1220
Score = 29.5 bits (63), Expect = 9.2
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -1
Query: 582 KGRREKKKMKSEQDEAEREKEK 517
K +++KKK K E++E E+EK+K
Sbjct: 313 KKKKDKKKKKGEKEEKEKEKKK 334
>AC079447-4|AAX93258.1| 492|Homo sapiens unknown protein.
Length = 492
Score = 29.5 bits (63), Expect = 9.2
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -1
Query: 582 KGRREKKKMKSEQDEAEREKEK 517
K +++KKK K E++E E+EK+K
Sbjct: 313 KKKKDKKKKKGEKEEKEKEKKK 334
>AB018284-1|BAA34461.2| 1222|Homo sapiens KIAA0741 protein protein.
Length = 1222
Score = 29.5 bits (63), Expect = 9.2
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -1
Query: 582 KGRREKKKMKSEQDEAEREKEK 517
K +++KKK K E++E E+EK+K
Sbjct: 315 KKKKDKKKKKGEKEEKEKEKKK 336
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,545,786
Number of Sequences: 237096
Number of extensions: 1439539
Number of successful extensions: 4552
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4420
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6155099854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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