Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0451.Seq
         (588 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    30   1.1  
U53154-11|AAC25848.1|  390|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z70204-3|CAA94113.1|  385|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AC024211-1|AAF36065.1|  252|Caenorhabditis elegans Hypothetical ...    28   4.3  
AC006665-2|AAF39904.1|  341|Caenorhabditis elegans Hypothetical ...    28   4.3  
U12965-3|AAZ32811.1|  980|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily ass...    27   7.5  

>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
           protein F59E12.9 protein.
          Length = 1621

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = -1

Query: 567 KKKMKSEQDEAEREKEKAEN 508
           KKK K ++ EAEREKEKA++
Sbjct: 427 KKKEKEKEKEAEREKEKAKD 446


>U53154-11|AAC25848.1|  390|Caenorhabditis elegans Hypothetical
           protein C33G8.2 protein.
          Length = 390

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -1

Query: 576 RREKKKMKSEQDEAEREKEK 517
           +++KKK K + DE E+EK+K
Sbjct: 180 KKDKKKKKDDNDEEEKEKDK 199



 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -1

Query: 576 RREKKKMKSEQDEAEREKEK 517
           +++KKK K ++D+ + EKEK
Sbjct: 295 KKDKKKKKDDKDDEDEEKEK 314


>Z70204-3|CAA94113.1|  385|Caenorhabditis elegans Hypothetical
           protein C11G6.3 protein.
          Length = 385

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 585 RKGRREKKKMKSEQDEAEREKEK 517
           R+  REK+K + ++ E EREKEK
Sbjct: 246 REKEREKQKEREKEREKEREKEK 268



 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 588 SRKGRREKKKMKSEQDEAEREKEK 517
           SR+  REK++ K  + E E+E+EK
Sbjct: 229 SREKEREKEREKEREKEREKEREK 252



 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 585 RKGRREKKKMKSEQDEAEREKEK 517
           R+  REK++ K ++ E EREKE+
Sbjct: 242 REKEREKEREKQKEREKEREKER 264


>AC024211-1|AAF36065.1|  252|Caenorhabditis elegans Hypothetical
           protein Y76B12C.4 protein.
          Length = 252

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 585 RKGRREKKKMKSEQDEAEREKEKAE 511
           ++  REK K K E +EA REKE  E
Sbjct: 116 KEKEREKTKTKDELEEAPREKETME 140


>AC006665-2|AAF39904.1|  341|Caenorhabditis elegans Hypothetical
           protein H27M09.5 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 585 RKGRREKKKMKSEQDEAEREKEKAEN 508
           RKG + KK MKS++ +  + ++K +N
Sbjct: 42  RKGSKSKKSMKSKKSKKSKREKKGDN 67


>U12965-3|AAZ32811.1|  980|Caenorhabditis elegans Hypothetical
           protein F23F12.8 protein.
          Length = 980

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -1

Query: 585 RKGRREKKKMKSEQDEAEREKEKAENL 505
           R+   ++KK K E+D  +RE+++AE L
Sbjct: 489 RQQEEDQKKKKLEKDREQREQQEAEEL 515


>U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 278 protein.
          Length = 1130

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 585  RKGRREKKKMKSEQDEAEREKEKAE 511
            R+   EK+  K  + +AE+EKEKAE
Sbjct: 1017 REEASEKRTRKEAEKKAEKEKEKAE 1041


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,621,767
Number of Sequences: 27780
Number of extensions: 249702
Number of successful extensions: 1125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)