Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0451.Seq
         (588 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28540.1 68416.m03564 AAA-type ATPase family protein contains...    30   1.3  
At3g28520.1 68416.m03562 AAA-type ATPase family protein contains...    29   1.7  
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p...    28   5.3  
At1g60130.1 68414.m06774 jacalin lectin family protein similar t...    27   7.0  
At1g18400.1 68414.m02298 basic helix-loop-helix (bHLH) family pr...    27   7.0  
At5g48860.1 68418.m06044 hypothetical protein                          27   9.3  
At3g50930.1 68416.m05576 AAA-type ATPase family protein contains...    27   9.3  
At2g35880.1 68415.m04405 expressed protein                             27   9.3  
At2g32360.1 68415.m03955 ubiquitin family protein contains INTER...    27   9.3  

>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 510

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -1

Query: 579 GRREKKKMKSEQDEAEREKEKAENL 505
           G+R+KKK + E +E E +K++AE L
Sbjct: 307 GQRKKKKEEDEDEEEEEKKKEAEKL 331


>At3g28520.1 68416.m03562 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 478

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -1

Query: 570 EKKKMKSEQDEAEREKEKAENL 505
           E +K K E+DE + EK++AENL
Sbjct: 296 EHRKKKKEEDEDKEEKKEAENL 317


>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF01480: PWI domain, PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 899

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -1

Query: 576 RREKKKMKSEQDEAEREKEK 517
           RRE++K K  Q E E+EKEK
Sbjct: 486 RREREKEKERQYEKEKEKEK 505


>At1g60130.1 68414.m06774 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 600

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +2

Query: 92  YCTVKLYIHVPAHG--ARPITKH*IITYINSERNPHVHGYQYETTDTYLLTHNMSLQSVK 265
           Y   + YI+ PAHG   R  T+   I ++++E    V GY Y+  D+ +      +Q ++
Sbjct: 203 YVKDRKYIYGPAHGVRGRGFTESFEINHLDNEYMVSVEGY-YDEGDSGI------IQGIQ 255

Query: 266 FEPNTRT 286
           F  N +T
Sbjct: 256 FRTNIKT 262


>At1g18400.1 68414.m02298 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 260

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = -1

Query: 585 RKGRREKKKMKSEQDEAERE 526
           R+G+R KKK K E+DE ERE
Sbjct: 123 RRGKRLKKK-KEEEDEKERE 141


>At5g48860.1 68418.m06044 hypothetical protein 
          Length = 175

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +1

Query: 202 ISVRNNGHIFTYTQHVPTIGKIRAKHTHSAKN 297
           IS++NN HIF+ T++ P + +IR   +  ++N
Sbjct: 127 ISIKNNVHIFSATRY-PRVRRIRKHVSTKSRN 157


>At3g50930.1 68416.m05576 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 576

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/19 (52%), Positives = 17/19 (89%)
 Frame = -1

Query: 564 KKMKSEQDEAEREKEKAEN 508
           KK+++EQD+A+ EK++ EN
Sbjct: 501 KKIENEQDKAKTEKQELEN 519


>At2g35880.1 68415.m04405 expressed protein
          Length = 432

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 588 SRKGRREKKKMKSEQDEAEREKEKA 514
           S K + +KKK+K E+ E   E+EKA
Sbjct: 376 SVKAKEKKKKVKKEEAEKRGEEEKA 400


>At2g32360.1 68415.m03955 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 175

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 582 KGRREKKKMKSEQDEAEREKEK 517
           K   E + +K E+DE E+EKEK
Sbjct: 131 KDEEEDRDVKVEEDEEEKEKEK 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,561,424
Number of Sequences: 28952
Number of extensions: 210724
Number of successful extensions: 729
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)