Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0449.Seq
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83233-10|CAB05768.2|  364|Caenorhabditis elegans Hypothetical p...    27   9.6  
AF273799-1|AAG15148.1|  365|Caenorhabditis elegans nuclear recep...    27   9.6  
AF273798-1|AAG15147.1|  366|Caenorhabditis elegans nuclear recep...    27   9.6  

>Z83233-10|CAB05768.2|  364|Caenorhabditis elegans Hypothetical
           protein K06B4.11 protein.
          Length = 364

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 428 LITQINVALTKFHLYMEIXNYRNLKTVPAIIF 523
           ++  I  A  +FH YMEI N  NL  +P  ++
Sbjct: 326 ILPSIQRASHRFHEYMEIKNLLNLYALPKNLY 357


>AF273799-1|AAG15148.1|  365|Caenorhabditis elegans nuclear receptor
           NHR-53 protein.
          Length = 365

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 428 LITQINVALTKFHLYMEIXNYRNLKTVPAIIF 523
           ++  I  A  +FH YMEI N  NL  +P  ++
Sbjct: 327 ILPSIQRASHRFHEYMEIKNLLNLYALPKNLY 358


>AF273798-1|AAG15147.1|  366|Caenorhabditis elegans nuclear receptor
           NHR-53 protein.
          Length = 366

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 428 LITQINVALTKFHLYMEIXNYRNLKTVPAIIF 523
           ++  I  A  +FH YMEI N  NL  +P  ++
Sbjct: 328 ILPSIQRASHRFHEYMEIKNLLNLYALPKNLY 359


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,249,699
Number of Sequences: 27780
Number of extensions: 156476
Number of successful extensions: 151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)