Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0448.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    25   0.64 
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    23   1.5  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   4.5  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   6.0  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   7.9  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 138 GSNIWSLLNPPHPQNSPTTTRRAA*IYNSYN 46
           GSN  SL+  P P  SP   +     YNS+N
Sbjct: 258 GSNTSSLITTPSPSASPLAYQHE---YNSFN 285


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 182 PSSYQQLGREFKKLLAPISGVSSIHLTHKT 93
           P+S Q L R  K +LA     +SI+  H T
Sbjct: 260 PASTQSLSRWIKMVLAESGVDTSIYTAHST 289


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 417 RASGYHHPAYFC 382
           RASGYH+ A  C
Sbjct: 194 RASGYHYNALTC 205


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 262 WLLEPMDIYNVNAPPTLRYK 321
           WL  P  + N   P +LR+K
Sbjct: 7   WLTPPHSLGNTVTPVSLRFK 26


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -2

Query: 366 RFEGWGSRCNY-ETLELISQGGWRI 295
           ++ G      Y E +EL  +GGW++
Sbjct: 289 KYTGEAGMLGYNEIVELQKEGGWKV 313


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,624
Number of Sequences: 336
Number of extensions: 2980
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)