Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0448.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    25   6.3  
SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr...    25   8.4  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    25   8.4  

>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 503 NPISYLYIYVTESSNVISTDCKNVW 577
           N ++YL  Y+T+   +I  D K+ W
Sbjct: 316 NGVNYLSRYITDQLGIIGIDRKHQW 340


>SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 251

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 48  YMSYIFTLLYESWLESFVGE 107
           YM +  T LYE+WL ++V +
Sbjct: 145 YMPHCPTSLYETWLAAYVND 164


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +3

Query: 15  FIKNNYKAYVNYMSYIFTLLYESWLESFVGEVD*GDS 125
           ++K+  ++++NY+S    LLY+  L+ FV E D G S
Sbjct: 178 YLKSGLQSWLNYVSTNPNLLYDPELQLFV-ESDYGYS 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,768
Number of Sequences: 5004
Number of extensions: 51811
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)