Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0448.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1114 - 9179614-9180167,9180223-9180544,9181524-9181820,918...    32   0.30 
07_03_1185 + 24645963-24646316,24647990-24648226,24649027-246491...    29   2.1  
08_02_1461 - 27299891-27301870                                         28   4.9  
06_01_0216 - 1641914-1642381,1642471-1642725                           28   6.5  
07_01_0730 + 5562805-5563254                                           27   8.6  
04_04_1415 - 33408289-33408626,33408733-33408997                       27   8.6  
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497...    27   8.6  

>06_01_1114 -
           9179614-9180167,9180223-9180544,9181524-9181820,
           9181991-9182878,9182896-9182941,9182964-9183350,
           9183648-9183985
          Length = 943

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 330 SHSYNGCPILQNALLLHGRNRQGGGTHSRGLTRGLTI 440
           SHS N CP  +   +  G N  GGGT+   +   +TI
Sbjct: 220 SHSRNDCPETREEAMYMGNNNNGGGTNHAHIINEVTI 256


>07_03_1185 +
           24645963-24646316,24647990-24648226,24649027-24649170,
           24649296-24649427,24649524-24649811
          Length = 384

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 357 GWGSRCNYETLELISQGGWRIYVVDVHG 274
           G+G+ C Y+T+ L+   G+R+  +D+ G
Sbjct: 137 GFGAWCWYKTIALLEDSGFRVNAIDLTG 164


>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +3

Query: 372 LLHGRNRQGGGTHSRGL 422
           LL GR R GGG H RGL
Sbjct: 290 LLRGRRRGGGGGHRRGL 306


>06_01_0216 - 1641914-1642381,1642471-1642725
          Length = 240

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = -2

Query: 417 RASGYHHPAYF--CREAVMRFEGWG 349
           R++G HHP YF   +EA+M  +G G
Sbjct: 74  RSAGPHHPPYFEMIKEAIMALDGNG 98


>07_01_0730 + 5562805-5563254
          Length = 149

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 123 SLLNPPHPQNSPTTTRRAA 67
           SLL+PPHP  SP +T  +A
Sbjct: 77  SLLDPPHPDPSPRSTAGSA 95


>04_04_1415 - 33408289-33408626,33408733-33408997
          Length = 200

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 381 GRNRQGGGTHSRGLTRGLTIK*TDLSKSRAA 473
           G    GGG  +R LT G+T   TD++++ AA
Sbjct: 79  GDGPDGGGDGARMLTAGITTMATDMAETMAA 109


>02_03_0390 +
           18448671-18448889,18449567-18449632,18449702-18449761,
           18449864-18449959,18452287-18452447,18452669-18452790,
           18452872-18453239,18453653-18453739,18453835-18453969,
           18454349-18454471,18454771-18454854,18455023-18455187,
           18455310-18455486,18455660-18455773,18455912-18456016,
           18457056-18457174,18457244-18457385,18457461-18457555,
           18457757-18457862,18458125-18458204,18458285-18458461,
           18459828-18459912,18460024-18460104,18460208-18460351,
           18460468-18460563,18460654-18460854,18461462-18461895,
           18462417-18462478,18462622-18462872,18462956-18463030,
           18463110-18463300,18463696-18463867,18463956-18464020,
           18464646-18464778,18464861-18464962,18465047-18465130,
           18465656-18465730,18465818-18465877,18465967-18466223,
           18466560-18466608,18466781-18466941,18467013-18467079,
           18467174-18467299,18467422-18467592,18468566-18468769,
           18469059-18469165,18469608-18469737,18469774-18469959,
           18470704-18470742
          Length = 2202

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 246 AHLC*VVTGAHGHLQRKCATHLEI*VLRSHSYNGCPILQNALLL 377
           AH C ++   +G++ RK A    + +    +Y G  I+QNA LL
Sbjct: 860 AHKC-ILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLL 902


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,829,229
Number of Sequences: 37544
Number of extensions: 357166
Number of successful extensions: 935
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)