Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0448.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1224| Best HMM Match : bZIP_1 (HMM E-Value=8e-10)                   29   2.9  
SB_53568| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.61)          29   3.8  
SB_56507| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_49036| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_49479| Best HMM Match : R3H (HMM E-Value=0.0079)                    27   8.7  
SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)                  27   8.7  

>SB_1224| Best HMM Match : bZIP_1 (HMM E-Value=8e-10)
          Length = 496

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 30  YKAYVNYMSYIFTLLYESWLESFVGEVD*GDSRYW 134
           Y A  + MSY FT+   +WL   +     GD  YW
Sbjct: 356 YGAGDHLMSYTFTVFLAAWLTPCIENEKNGDVEYW 390


>SB_53568| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.61)
          Length = 375

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = -1

Query: 292 RCRCPWAPVTT*HR*AVSSSTHKRRLEPTRPCEAKIALQ---ATSN*VENSKNCW 137
           + +C W  +    R A +     +R EPTRPC+ K   +    T+   EN   C+
Sbjct: 152 KSKC-WKTIKDNKREAFAGDDEDQRPEPTRPCKCKTQFEECLKTAEGCENQLTCY 205


>SB_56507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 782

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 420 VRASGYHHPAYFCREAVMRFEGWGSRCNYETLELISQ 310
           V+A  YHH  Y C  A    E WG   ++ T   +SQ
Sbjct: 747 VKAQTYHH--YLCIPAEKSIEEWGGLSSWGTNSTVSQ 781


>SB_49036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 696

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 170 GSLKGYFSFARSG-RLKPSLMGGRAYSSPVLSGYWS 274
           G+LKGY     S  + KPS +  +AYSS VLS  WS
Sbjct: 286 GNLKGYIKVIDSDFKWKPSEV--QAYSSKVLSLLWS 319


>SB_49479| Best HMM Match : R3H (HMM E-Value=0.0079)
          Length = 605

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 562 VCGNDVRRFRHIDI*IANRICLCLLKGS 479
           V G +   FRH++  +A+ + +C LKGS
Sbjct: 53  VDGENCETFRHLEKLLASAVSICRLKGS 80


>SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)
          Length = 1440

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 473 VETTLX*TKTNPISYLYIYVTESSNVISTDCKNVWI 580
           +E  +   K+NP    Y+ V +S+N    +C N+ I
Sbjct: 726 IERAIQCAKSNPSRIFYLLVNQSANKTVNECVNISI 761


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,771,855
Number of Sequences: 59808
Number of extensions: 391422
Number of successful extensions: 809
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)