Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0445.Seq
         (449 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6DGH3 Cluster: Zgc:92922; n=13; Euteleostomi|Rep: Zgc:...    52   8e-06
UniRef50_P60468 Cluster: Protein transport protein Sec61 subunit...    52   8e-06
UniRef50_Q5BSB6 Cluster: SJCHGC05179 protein; n=3; Bilateria|Rep...    33   2.2  
UniRef50_A2EC85 Cluster: Putative uncharacterized protein; n=1; ...    33   2.9  
UniRef50_P47116 Cluster: Serine/threonine-protein kinase PTK2/ST...    32   6.6  
UniRef50_Q50279 Cluster: VsaA; n=4; Mycoplasma pulmonis|Rep: Vsa...    31   8.8  

>UniRef50_Q6DGH3 Cluster: Zgc:92922; n=13; Euteleostomi|Rep:
           Zgc:92922 - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 97

 Score = 51.6 bits (118), Expect = 8e-06
 Identities = 23/45 (51%), Positives = 26/45 (57%)
 Frame = +3

Query: 255 SGGMWRFYXDDSXXXXXXXXXXXXXXXXXIASVFMLHIWGKYXRA 389
           +GGMWRFY +DS                 IASVFMLHIWGKY R+
Sbjct: 53  TGGMWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 97



 Score = 36.3 bits (80), Expect = 0.31
 Identities = 20/31 (64%), Positives = 25/31 (80%)
 Frame = +1

Query: 115 SATSVGSGSRSPTKASAGPRTASGSTVRQRK 207
           SAT+VG+ SRSP+K  A PRTA G++ RQRK
Sbjct: 7   SATNVGASSRSPSKTVA-PRTA-GTSARQRK 35


>UniRef50_P60468 Cluster: Protein transport protein Sec61 subunit
           beta; n=31; Eukaryota|Rep: Protein transport protein
           Sec61 subunit beta - Homo sapiens (Human)
          Length = 96

 Score = 51.6 bits (118), Expect = 8e-06
 Identities = 23/45 (51%), Positives = 26/45 (57%)
 Frame = +3

Query: 255 SGGMWRFYXDDSXXXXXXXXXXXXXXXXXIASVFMLHIWGKYXRA 389
           +GGMWRFY +DS                 IASVFMLHIWGKY R+
Sbjct: 52  TGGMWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96



 Score = 40.3 bits (90), Expect = 0.019
 Identities = 21/33 (63%), Positives = 25/33 (75%)
 Frame = +1

Query: 109 SPSATSVGSGSRSPTKASAGPRTASGSTVRQRK 207
           +PS T+VGS  RSP+KA A    A+GSTVRQRK
Sbjct: 5   TPSGTNVGSSGRSPSKAVAA--RAAGSTVRQRK 35


>UniRef50_Q5BSB6 Cluster: SJCHGC05179 protein; n=3; Bilateria|Rep:
           SJCHGC05179 protein - Schistosoma japonicum (Blood
           fluke)
          Length = 88

 Score = 33.5 bits (73), Expect = 2.2
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +3

Query: 273 FYXDDSXXXXXXXXXXXXXXXXXIASVFMLHIWGKYXRA 389
           FY +DS                 I SVF+LH WGKY R+
Sbjct: 49  FYSEDSPGIKVGPVPVLVMSLCFIVSVFLLHFWGKYTRS 87


>UniRef50_A2EC85 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 848

 Score = 33.1 bits (72), Expect = 2.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 150 G*STPRSYRGSTRRLRHFYSNVVKLYFKSDIH 55
           G S P  Y+  TR   H+Y ++ K+YF  DIH
Sbjct: 442 GESYPNRYKPGTRHDDHYYVSIDKIYFFPDIH 473


>UniRef50_P47116 Cluster: Serine/threonine-protein kinase PTK2/STK2;
           n=5; Saccharomycetales|Rep: Serine/threonine-protein
           kinase PTK2/STK2 - Saccharomyces cerevisiae (Baker's
           yeast)
          Length = 818

 Score = 31.9 bits (69), Expect = 6.6
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +1

Query: 97  KMPQSPSATSVGSGSRSPTKASAGPRTASGSTVRQR 204
           K P SPS +  GSG  SP+ +SAG R  S S  R++
Sbjct: 53  KRPTSPSISGSGSGGNSPS-SSAGARQRSASLHRRK 87


>UniRef50_Q50279 Cluster: VsaA; n=4; Mycoplasma pulmonis|Rep: VsaA -
           Mycoplasma pulmonis
          Length = 813

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = +1

Query: 103 PQSPSATSVGSGSRSPTKASAGPRTASGS 189
           PQ+P  T  GSGS + TKA   P T SGS
Sbjct: 765 PQTPPTTGSGSGS-TDTKAQTPPTTGSGS 792


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 348,727,626
Number of Sequences: 1657284
Number of extensions: 5558683
Number of successful extensions: 13520
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13478
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)