Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0445.Seq
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    26   3.1  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   4.1  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    25   7.1  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   9.4  
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma...    24   9.4  

>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 97  KMPQSPSATSVGSGSRSPTKASAGPRTASGSTVRQR 204
           + P     +++ + S + + AS GP T S STV ++
Sbjct: 278 RRPDHNHTSTLDASSSNTSLASTGPMTVSSSTVERK 313


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 179 AVRGPAEAFVGDLLPDPTEVALGD 108
           ++RG  E  VGDL  D  + +LGD
Sbjct: 269 SLRGDVEVVVGDLERDGRDTSLGD 292


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 141 TPRSYRGSTRRLRH 100
           TP+SYR S +R++H
Sbjct: 80  TPKSYRKSVKRIKH 93


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 100 MPQSPSATSVGSGSRSPTKASAGPRTASGST 192
           +  S SAT   S S SPT +S+    +S S+
Sbjct: 98  LTSSSSATLTSSSSASPTSSSSSHALSSSSS 128


>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 120 STRRLRHFYSNVVKLYFKSDI 58
           S R L HFY NV  ++F S +
Sbjct: 212 SLRALGHFYGNVSVIHFDSHL 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,460,678
Number of Sequences: 5004
Number of extensions: 23650
Number of successful extensions: 31
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)