Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0445.Seq
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0146 - 15080906-15081322,15081556-15081697,15081804-150818...    28   3.0  
02_01_0567 - 4168164-4168250,4168672-4168828,4168951-4169090,417...    28   4.0  
02_05_0595 - 30225747-30226589,30227248-30227386,30228734-30228849     27   7.0  
02_04_0530 + 23702714-23703787                                         27   7.0  
11_06_0372 + 22781438-22781977                                         27   9.2  

>09_04_0146 -
           15080906-15081322,15081556-15081697,15081804-15081887,
           15081982-15082039,15084038-15084572
          Length = 411

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 103 PQSPSATSVGSGSRSPTKASAGPRTASGSTVRQRK 207
           P + S  + G+G+   +  S GPR A+GS+V + K
Sbjct: 4   PVASSRVAAGAGAARRSSPSPGPRPAAGSSVVRDK 38


>02_01_0567 -
           4168164-4168250,4168672-4168828,4168951-4169090,
           4170318-4170456,4170562-4170830,4170914-4171000,
           4171259-4171327,4171427-4171455,4171544-4171950,
           4172906-4172977,4173150-4173221,4173299-4173370,
           4173454-4173519,4173717-4173785,4173866-4173995,
           4174846-4174975
          Length = 664

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 103 PQSPSATSVGSGSRSPTKASAGPRTASGSTVRQRK 207
           P SPS++   S S SP+ +S G      S+   RK
Sbjct: 233 PSSPSSSGTPSPSSSPSNSSGGSTARDSSSPSSRK 267


>02_05_0595 - 30225747-30226589,30227248-30227386,30228734-30228849
          Length = 365

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
 Frame = +1

Query: 109 SPSATSVGSGSRSPTKASA----GPRTASGSTV 195
           SP ++S GSG+ SPT A+A     P T S +T+
Sbjct: 213 SPRSSSGGSGNTSPTAAAATTPTTPATPSSNTI 245


>02_04_0530 + 23702714-23703787
          Length = 357

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 97  KMPQSPSATSVGSGSRSPTKASAGPRTASGS 189
           K P +PS+T+ GS S + + +S+   ++SGS
Sbjct: 229 KSPGNPSSTTTGSSSGNASGSSSTSASSSGS 259


>11_06_0372 + 22781438-22781977
          Length = 179

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 115 SATSVGSGSRSPTKASAGPRTA 180
           S    GSGSRSP+KA+  P  A
Sbjct: 3   SGDEEGSGSRSPSKAAPAPAPA 24


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,496,740
Number of Sequences: 37544
Number of extensions: 162145
Number of successful extensions: 425
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)