Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0443.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    79   6e-16
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    77   2e-15
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    27   2.1  
SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch...    27   2.1  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    25   8.4  

>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 78.6 bits (185), Expect = 6e-16
 Identities = 36/70 (51%), Positives = 42/70 (60%)
 Frame = +1

Query: 256 VCHTDAYTLSGKDPEGVXPVVLXXXXXXXXXXXXXXXTXVKPGDHVVPLXVXQCNTCKFC 435
           VCHTDAYTLSGKDPEG+ PV+L               T V+ GD V+ L   +C TCKFC
Sbjct: 49  VCHTDAYTLSGKDPEGLFPVILGHEGAGIVESVGPQVTTVQVGDPVIALYTPECKTCKFC 108

Query: 436 XNPKTNLARR 465
            + KTNL  R
Sbjct: 109 KSGKTNLCGR 118



 Score = 59.7 bits (138), Expect = 3e-10
 Identities = 25/45 (55%), Positives = 34/45 (75%)
 Frame = +3

Query: 462 KVRSTQGQRVMPDGXSDSACXGQELYHFMGXSTFSQYTAVLEISL 596
           ++R+TQG+ +MPDG S  +C G  L HFMG STFS+YT V +IS+
Sbjct: 118 RIRTTQGKGLMPDGTSRFSCNGNTLLHFMGCSTFSEYTVVADISV 162



 Score = 55.2 bits (127), Expect = 7e-09
 Identities = 23/39 (58%), Positives = 29/39 (74%)
 Frame = +2

Query: 128 TVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKI 244
           T GK+I C AAVAW+   PLSIE ++V PP+  EVR+KI
Sbjct: 6   TAGKIINCKAAVAWQPAAPLSIENVQVFPPRVHEVRIKI 44


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 77.0 bits (181), Expect = 2e-15
 Identities = 34/70 (48%), Positives = 40/70 (57%)
 Frame = +1

Query: 256 VCHTDAYTLSGKDPEGVXPVVLXXXXXXXXXXXXXXXTXVKPGDHVVPLXVXQCNTCKFC 435
           VCHTDAYTLSG DPEG  P+VL                 V+PGDHV+ L   +C  CKFC
Sbjct: 46  VCHTDAYTLSGVDPEGAFPIVLGHEGAGIVESIGEGVINVRPGDHVILLYTPECKECKFC 105

Query: 436 XNPKTNLARR 465
            + KTNL  +
Sbjct: 106 RSGKTNLCSK 115



 Score = 58.4 bits (135), Expect = 7e-10
 Identities = 28/41 (68%), Positives = 32/41 (78%)
 Frame = +2

Query: 122 MSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKI 244
           MS  GK I C AAVAW A +PLSIE+I+V PPKA EVRVK+
Sbjct: 1   MSFEGKTITCKAAVAWGAKEPLSIEDIQVAPPKAHEVRVKV 41



 Score = 57.6 bits (133), Expect = 1e-09
 Identities = 25/45 (55%), Positives = 33/45 (73%)
 Frame = +3

Query: 462 KVRSTQGQRVMPDGXSDSACXGQELYHFMGXSTFSQYTAVLEISL 596
           K+R TQG+ +MPDG S  +C  + L H+MG S+FSQYT V +ISL
Sbjct: 115 KIRETQGRGLMPDGTSRFSCRDKTLLHYMGCSSFSQYTVVADISL 159


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 533 TLPFYGLXNIQSVHSCSRNF 592
           T+PFYGL +    HSCS  F
Sbjct: 552 TVPFYGLESYGLPHSCSTMF 571


>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
           Crs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 229

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 18  ICLIGF*YFVTS--SSKRFIARL*FQHFVIGSCPVQSCQQ 131
           + L+ F  +V S  S + F+  L FQH    S P +SC Q
Sbjct: 175 LALLNFDIYVISLPSVESFLTPLIFQHVFFKSLPSESCDQ 214


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 22/69 (31%), Positives = 35/69 (50%)
 Frame = -2

Query: 276 IRVSMADSVAVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLPTVDMTALDNCQS 97
           IRVS+    AV ++  SP+F  S   SS+D  +  S  + +K+  T     MT      S
Sbjct: 505 IRVSLQGDDAVYVSGRSPSFAASRP-SSVDF-MSQSTDSLSKNDTTASNGSMTP---SSS 559

Query: 96  QNVEIIVEL 70
           QN  +I+++
Sbjct: 560 QNNSVIIDI 568


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,125,896
Number of Sequences: 5004
Number of extensions: 36976
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)