Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0443.Seq
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1209 + 34948899-34948938,34949086-34949222,34949854-349499... 75 4e-14
11_01_0688 - 5667539-5667655,5667792-5667953,5668084-5668179,566... 74 1e-13
11_01_0689 - 5678227-5678343,5678475-5678636,5678751-5678846,567... 73 2e-13
11_01_0686 - 5635207-5635323,5635483-5635644,5635727-5635822,563... 69 3e-12
03_01_0635 - 4660692-4660737,4660783-4660829,4661371-4661507,466... 53 2e-07
02_05_0070 - 25584690-25584806,25585151-25585312,25585396-255854... 51 8e-07
03_01_0636 - 4664472-4664588,4664695-4664856,4664984-4665061,466... 49 2e-06
10_01_0344 - 3777610-3777758,3777870-3777959,3778950-3779025,377... 46 2e-05
08_01_0065 + 452383-452629,452733-452868,453049-453118,453237-45... 38 0.006
03_01_0012 - 101584-101898,102274-102531,102932-103474 33 0.17
09_04_0028 - 13928542-13929538,13929736-13929818 33 0.23
09_04_0029 - 13932414-13933416,13933821-13933903 31 0.53
04_04_1128 + 31103582-31103709,31105231-31105344,31105906-311064... 31 0.70
09_04_0031 + 13946692-13946774,13947007-13948012 30 1.6
06_03_0355 + 19822110-19824491 29 2.8
03_01_0633 - 4649267-4649383,4649480-4649641,4649735-4649895,465... 29 2.8
04_03_0375 - 15085537-15085827,15086742-15087101,15087127-15087684 28 6.5
>02_05_1209 +
34948899-34948938,34949086-34949222,34949854-34949900,
34949990-34950315,34950640-34950722,34950801-34950876,
34951499-34951656,34951979-34952140,34952235-34952351
Length = 381
Score = 74.9 bits (176), Expect = 4e-14
Identities = 32/67 (47%), Positives = 39/67 (58%)
Frame = +1
Query: 256 VCHTDAYTLSGKDPEGVXPVVLXXXXXXXXXXXXXXXTXVKPGDHVVPLXVXQCNTCKFC 435
+CHTD YT SGKDPEG+ P +L T V+PGDHV+P +C CKFC
Sbjct: 48 LCHTDHYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFC 107
Query: 436 XNPKTNL 456
+ KTNL
Sbjct: 108 KSGKTNL 114
Score = 63.7 bits (148), Expect = 1e-10
Identities = 28/43 (65%), Positives = 36/43 (83%)
Frame = +2
Query: 125 STVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITAT 253
ST G+VI C AAVAWEA +P++IE+++V PP+AGEVRVKI T
Sbjct: 4 STQGQVITCKAAVAWEANRPMTIEDVQVAPPQAGEVRVKILFT 46
Score = 44.4 bits (100), Expect = 7e-05
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +3
Query: 462 KVRSTQGQRVMP-DGXSDSACXGQELYHFMGXSTFSQYTAVLEISL 596
KVR+ G VM D S + G+ +YHFMG STFSQYT V ++S+
Sbjct: 117 KVRAATGVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV 162
>11_01_0688 -
5667539-5667655,5667792-5667953,5668084-5668179,
5668278-5668339,5668434-5668509,5668612-5668694,
5668807-5669132,5669741-5669787,5669900-5670036,
5670135-5670168
Length = 379
Score = 73.7 bits (173), Expect = 1e-13
Identities = 35/44 (79%), Positives = 38/44 (86%)
Frame = +2
Query: 122 MSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITAT 253
M+T GKVIKC AAVAWEAGKPLSIEE+EV PP+A EVRVKI T
Sbjct: 1 MATAGKVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILYT 44
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/78 (30%), Positives = 36/78 (46%)
Frame = +1
Query: 256 VCHTDAYTLSGKDPEGVXPVVLXXXXXXXXXXXXXXXTXVKPGDHVVPLXVXQCNTCKFC 435
+CHTD Y K V P +L T + PGDHV+P+ +C C C
Sbjct: 46 LCHTDVYFWEAKGQTPVFPRILGHEAGGIVESVGEGVTELAPGDHVLPVFTGECKECDHC 105
Query: 436 XNPKTNLARRFVLLKVNV 489
+ ++N+ LL++NV
Sbjct: 106 KSEESNMCD---LLRINV 120
Score = 34.7 bits (76), Expect = 0.057
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 498 DGXSDSACXGQELYHFMGXSTFSQYTAV 581
DG S G+ ++HF+G STFS+YT +
Sbjct: 128 DGKSRFTIKGKPIFHFVGTSTFSEYTVI 155
>11_01_0689 -
5678227-5678343,5678475-5678636,5678751-5678846,
5679345-5679406,5679648-5679723,5679847-5679929,
5680525-5680853,5681402-5681448,5681707-5681843,
5682093-5682126
Length = 380
Score = 72.5 bits (170), Expect = 2e-13
Identities = 34/44 (77%), Positives = 38/44 (86%)
Frame = +2
Query: 122 MSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITAT 253
M+T GKVIKC AAVAWEAGKPLSIEE+EV PP+A EVR+KI T
Sbjct: 1 MATAGKVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRLKILYT 44
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/77 (29%), Positives = 35/77 (45%)
Frame = +1
Query: 256 VCHTDAYTLSGKDPEGVXPVVLXXXXXXXXXXXXXXXTXVKPGDHVVPLXVXQCNTCKFC 435
+CHTD Y K V P + T + PGDHV+P+ +C C+ C
Sbjct: 46 LCHTDVYFWEAKGQTPVFPRIFGHEAGGIVESVGEGVTELSPGDHVLPVFTGECGDCRHC 105
Query: 436 XNPKTNLARRFVLLKVN 486
+ ++NL LL++N
Sbjct: 106 LSEESNLCD---LLRIN 119
Score = 35.5 bits (78), Expect = 0.032
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 462 KVRSTQGQRVMPDGXSDSACXGQELYHFMGXSTFSQYTAV 581
++ + +G + +A GQ +YHF+G STFS+YT V
Sbjct: 117 RINTDRGAMIGDGQTRFTARGGQPVYHFLGTSTFSEYTVV 156
>11_01_0686 -
5635207-5635323,5635483-5635644,5635727-5635822,
5635903-5635964,5636046-5636121,5636201-5636283,
5636369-5636694,5637524-5637570,5637668-5637804,
5638064-5638097
Length = 379
Score = 68.9 bits (161), Expect = 3e-12
Identities = 33/44 (75%), Positives = 36/44 (81%)
Frame = +2
Query: 122 MSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITAT 253
M+T GKVIKC AAVAWEA KPL IEE+EV PP+A EVRVKI T
Sbjct: 1 MATAGKVIKCKAAVAWEAAKPLVIEEVEVAPPQAMEVRVKILFT 44
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/77 (28%), Positives = 34/77 (44%)
Frame = +1
Query: 256 VCHTDAYTLSGKDPEGVXPVVLXXXXXXXXXXXXXXXTXVKPGDHVVPLXVXQCNTCKFC 435
+CHTD Y K V P + T + PGDHV+P+ +C C C
Sbjct: 46 LCHTDVYFWEAKGQTPVFPRIFGHEAGGIVESVGEGVTDLAPGDHVLPVFTGECKECAHC 105
Query: 436 XNPKTNLARRFVLLKVN 486
+ ++N+ LL++N
Sbjct: 106 KSAESNMCD---LLRIN 119
Score = 35.9 bits (79), Expect = 0.025
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +3
Query: 498 DGXSDSACXGQELYHFMGXSTFSQYTAV 581
DG S + G+ +YHF+G STFS+YT +
Sbjct: 128 DGKSRFSINGKPIYHFVGTSTFSEYTVM 155
>03_01_0635 -
4660692-4660737,4660783-4660829,4661371-4661507,
4661661-4661697
Length = 88
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/37 (64%), Positives = 29/37 (78%)
Frame = +2
Query: 143 IKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITAT 253
I+C AAV AG+PL++EEI VDPPKA EVR+KI T
Sbjct: 9 IRCKAAVCRAAGEPLAVEEIVVDPPKAHEVRIKIVCT 45
>02_05_0070 -
25584690-25584806,25585151-25585312,25585396-25585491,
25585894-25585955,25586035-25586110,25586195-25586277,
25586456-25586778,25586882-25586928,25587014-25587150,
25587250-25587322,25588159-25588251,25588543-25588632,
25588684-25588786,25588869-25588981,25589181-25589778,
25589888-25590065,25590277-25590296,25590713-25590882,
25591245-25591485,25592997-25593199
Length = 994
Score = 50.8 bits (116), Expect = 8e-07
Identities = 23/46 (50%), Positives = 31/46 (67%)
Frame = +2
Query: 116 AVMSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITAT 253
A S+ I C AAVAW G+ L +EE+EV PP+A E+RVK+ +T
Sbjct: 615 AAASSPAAAITCRAAVAWAPGQALVMEEVEVAPPEAMEIRVKVVST 660
Score = 34.7 bits (76), Expect = 0.057
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 367 TXVKPGDHVVPLXVXQCNTCKFCXNPKTNLARRFVL 474
T + GDHV+ + + +C +CK C + K+N+ ++ L
Sbjct: 699 TEFEVGDHVLTVFIGECMSCKHCVSGKSNMCQKLGL 734
>03_01_0636 -
4664472-4664588,4664695-4664856,4664984-4665061,
4665157-4665221,4665476-4665558,4666052-4666414,
4666512-4666555,4666632-4666765,4666881-4666917
Length = 360
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/39 (58%), Positives = 28/39 (71%)
Frame = +2
Query: 137 KVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITAT 253
K I+C AAV A +PL +EEI VDPPKA E+R+KI T
Sbjct: 7 KPIRCKAAVCRAASEPLIVEEIVVDPPKAYEIRIKIICT 45
Score = 31.9 bits (69), Expect = 0.40
Identities = 19/66 (28%), Positives = 25/66 (37%)
Frame = +1
Query: 256 VCHTDAYTLSGKDPEGVXPVVLXXXXXXXXXXXXXXXTXVKPGDHVVPLXVXQCNTCKFC 435
+CHTD DP P +L + GD VVP + QC++C C
Sbjct: 47 LCHTDVTLWHKVDP--AFPRILGHEAYGVVESVGENVEGLAAGDTVVPTFMGQCDSCASC 104
Query: 436 XNPKTN 453
TN
Sbjct: 105 AAEWTN 110
>10_01_0344 -
3777610-3777758,3777870-3777959,3778950-3779025,
3779206-3779288,3780456-3780799,3782064-3782113,
3782406-3782542,3782692-3782776
Length = 337
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 256 VCHTDAYTLSGKDP-EGVXPVVLXXXXXXXXXXXXXXXTXVKPGDHVVPLXVXQCNTCKF 432
+CHTD G++ + P +L + PGDHVVP+ +C C +
Sbjct: 63 ICHTDLSAWKGENELQRKFPRILGHEAAGVVESVGEGVEDLAPGDHVVPIFTGECGACTY 122
Query: 433 CXNPKTNLARRF 468
C + K+NL + +
Sbjct: 123 CESSKSNLCKTY 134
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/48 (50%), Positives = 30/48 (62%)
Frame = +2
Query: 110 SSAVMSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITAT 253
+ A T GK IKC AAVA G+ L +EE+EV PP EVR+K+ T
Sbjct: 14 NGAGADTKGKPIKCKAAVAHGPGEALVMEEVEVAPPARMEVRLKVLFT 61
>08_01_0065 +
452383-452629,452733-452868,453049-453118,453237-453330,
453426-453639,453756-453897,454076-454246,454586-454780
Length = 422
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +2
Query: 158 AVAWEAGKPLSIEEIEVDPPKAGEVRVKITA 250
AV WE G+PL++E+ + PKAGE+ +K A
Sbjct: 53 AVFWEPGRPLTLEDFRMPRPKAGELLIKTKA 83
>03_01_0012 - 101584-101898,102274-102531,102932-103474
Length = 371
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 140 VIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITA 250
V+KC+ + L E++EV PK GE+R+K TA
Sbjct: 46 VVKCIRVHELGGPEVLRWEQVEVGEPKEGEIRIKNTA 82
>09_04_0028 - 13928542-13929538,13929736-13929818
Length = 359
Score = 32.7 bits (71), Expect = 0.23
Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
Frame = +1
Query: 256 VCHTDAYTLSGKDPEGVXPVVLXXXXXXXXXXXXXXXTXVKPGDHV-VPLXVXQCNTCKF 432
+CHTD +T+ + + PVV T K GD V V V C C
Sbjct: 44 ICHTDLHTIKNEWGNAMYPVVPGHEIVGVVAGVGAGVTRFKAGDTVGVGYFVDSCRACDS 103
Query: 433 CXNPKTNLARRFVL 474
C N V+
Sbjct: 104 CGKGDENYCPTMVI 117
>09_04_0029 - 13932414-13933416,13933821-13933903
Length = 361
Score = 31.5 bits (68), Expect = 0.53
Identities = 20/74 (27%), Positives = 25/74 (33%), Gaps = 1/74 (1%)
Frame = +1
Query: 256 VCHTDAYTLSGKDPEGVXPVVLXXXXXXXXXXXXXXXTXVKPGDHV-VPLXVXQCNTCKF 432
+CHTD + + + PVV T K GD V V V C TC
Sbjct: 44 ICHTDLHVVKNDWGNAMYPVVPGHEIVGVVTGVGAGVTKFKAGDTVGVGFFVGSCRTCDS 103
Query: 433 CXNPKTNLARRFVL 474
C N V+
Sbjct: 104 CGKGYENYCPTMVI 117
>04_04_1128 +
31103582-31103709,31105231-31105344,31105906-31106446,
31106911-31107003,31107041-31107194,31107296-31107498
Length = 410
Score = 31.1 bits (67), Expect = 0.70
Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
Frame = +1
Query: 256 VCHTDAYTLSGKDPEGVXPVVLXXXXXXXXXXXXXXXTXVKPGDHV-VPLXVXQCNTCKF 432
+CH+D +T+ + V PVV K GD V V V C C+
Sbjct: 59 ICHSDLHTIKNEWRNAVYPVVAGHEITGVVTEVGKNVARFKAGDEVGVGCMVNTCGGCES 118
Query: 433 CXNPKTNLARRFVLLKVN 486
C + N V+ N
Sbjct: 119 CRDGCENYCSGGVVFTYN 136
>09_04_0031 + 13946692-13946774,13947007-13948012
Length = 362
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/74 (25%), Positives = 25/74 (33%), Gaps = 1/74 (1%)
Frame = +1
Query: 256 VCHTDAYTLSGKDPEGVXPVVLXXXXXXXXXXXXXXXTXVKPGDHV-VPLXVXQCNTCKF 432
+CHTD + + + + PVV T K GD V V V C C
Sbjct: 44 ICHTDLHIIKNEWGNAMYPVVPGHEIVGVVTGVGAGVTKFKAGDTVGVGYFVDSCRACDS 103
Query: 433 CXNPKTNLARRFVL 474
C N V+
Sbjct: 104 CGKGYENYCPTMVI 117
>06_03_0355 + 19822110-19824491
Length = 793
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 194 EEIEVDPPKAGEVRVKITATESAILT 271
EE+EV P EV V I ATE A +T
Sbjct: 732 EEVEVTTPSTKEVEVTIAATEEAEVT 757
>03_01_0633 -
4649267-4649383,4649480-4649641,4649735-4649895,
4650056-4650080,4650155-4650237,4650332-4650704
Length = 306
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 525 GQELYHFMGXSTFSQYTAV 581
G ++HF+G S+FS+YT V
Sbjct: 80 GAPIHHFLGVSSFSEYTVV 98
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 382 GDHVVPLXVXQCNTCKFCXNPKTNLARRF 468
GD VVP + QC C C + ++N+ +
Sbjct: 31 GDPVVPTFLGQCTECVDCASERSNVCSTY 59
>04_03_0375 - 15085537-15085827,15086742-15087101,15087127-15087684
Length = 402
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/56 (32%), Positives = 23/56 (41%)
Frame = -2
Query: 285 GECIRVSMADSVAVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLPTVDMT 118
G + + A V T GG S+ +GLP S A AA +P VD T
Sbjct: 106 GGAVSAASAAVPGVDATGGEEVAGGDASVLGGGAGLPGSGALAAGVRAVVPDVDAT 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,266,103
Number of Sequences: 37544
Number of extensions: 262872
Number of successful extensions: 749
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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