Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0443.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   7e-09
SB_37880| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)                   29   2.2  
SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_6987| Best HMM Match : RVT_1 (HMM E-Value=2.2e-21)                  27   8.7  

>SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 28/37 (75%), Positives = 29/37 (78%)
 Frame = +2

Query: 143 IKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITAT 253
           I C AAVAWE  KPLSIE IEV PPKA EVR+KI AT
Sbjct: 2   ITCQAAVAWEPKKPLSIETIEVAPPKAHEVRIKILAT 38



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 21/42 (50%), Positives = 23/42 (54%)
 Frame = +1

Query: 256 VCHTDAYTLSGKDPEGVXPVVLXXXXXXXXXXXXXXXTXVKP 381
           VCHTDAYTLSG DPEG+ P +L               T VKP
Sbjct: 40  VCHTDAYTLSGVDPEGLFPCILGHEGGGIVESVGEGVTKVKP 81


>SB_37880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -2

Query: 255 SVAVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLPTVDMTALDN 106
           SV+V     S + G  +S SS    +P+S  +      T+PT DM A  N
Sbjct: 2   SVSVAENTPSSSSGDPSSHSSQSQSVPSSMDSGGSTAATVPTQDMVAFAN 51


>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
          Length = 787

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -2

Query: 270 VSMADSVAVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLPTVDMTALD 109
           VSMA+      T+T P F    S    +  +P+ H    K L    T ++T  D
Sbjct: 436 VSMAERCYTFQTKTPPRFRSRRSQEQSEDDVPSQHGKQKKGLTCPKTPNLTTSD 489


>SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/60 (31%), Positives = 21/60 (35%)
 Frame = +1

Query: 256 VCHTDAYTLSGKDPEGVXPVVLXXXXXXXXXXXXXXXTXVKPGDHVVPLXVXQCNTCKFC 435
           +C  D   L G+ P     VVL                 V  GD VV      CNTCK C
Sbjct: 85  ICDRDLQILEGELPAAKC-VVLGHEFSGVVSDVGSDVKNVSIGDRVVVNPNSSCNTCKAC 143


>SB_6987| Best HMM Match : RVT_1 (HMM E-Value=2.2e-21)
          Length = 521

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 102 GSCPVQSCQQSVK*LSAWPQSRGKQASRCPS-RRLKWTRQKPVKCALRSRPPSLPY*RVY 278
           G   +  CQ  V  L  WP    +  +RC +  +L+  R++P+   +    P+LP+ RV 
Sbjct: 449 GHLGITKCQGRVSSLVWWPLITKQMVNRCQTCAKLRPERREPLMALIL---PNLPWSRVG 505

Query: 279 T 281
           T
Sbjct: 506 T 506


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,485,619
Number of Sequences: 59808
Number of extensions: 305224
Number of successful extensions: 663
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)