Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0443.Seq
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U18781-1|AAB03374.1| 384|Caenorhabditis elegans alcohol dehydro... 87 9e-18
AC006663-4|AAF39899.1| 384|Caenorhabditis elegans Hypothetical ... 87 9e-18
AC006663-3|AAL32231.1| 386|Caenorhabditis elegans Hypothetical ... 87 9e-18
AC025722-1|AAK68507.1| 554|Caenorhabditis elegans Hypothetical ... 86 2e-17
AC024755-1|AAF59637.2| 369|Caenorhabditis elegans Hypothetical ... 30 1.1
Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z68337-10|CAA92753.1| 647|Caenorhabditis elegans Hypothetical p... 27 7.7
AL032641-8|CAA21650.1| 647|Caenorhabditis elegans Hypothetical ... 27 7.7
>U18781-1|AAB03374.1| 384|Caenorhabditis elegans alcohol
dehydrogenase protein.
Length = 384
Score = 87.0 bits (206), Expect = 9e-18
Identities = 39/77 (50%), Positives = 46/77 (59%)
Frame = +1
Query: 256 VCHTDAYTLSGKDPEGVXPVVLXXXXXXXXXXXXXXXTXVKPGDHVVPLXVXQCNTCKFC 435
VCHTDAYTL G DPEG+ PVVL T PGDHVVPL V QC C++C
Sbjct: 47 VCHTDAYTLDGHDPEGLFPVVLGHEGSGIVESVGEGVTGFAPGDHVVPLYVPQCKECEYC 106
Query: 436 XNPKTNLARRFVLLKVN 486
NPKTNL ++ + + N
Sbjct: 107 KNPKTNLCQKIRISQGN 123
Score = 62.9 bits (146), Expect = 2e-10
Identities = 27/46 (58%), Positives = 34/46 (73%)
Frame = +3
Query: 459 QKVRSTQGQRVMPDGXSDSACXGQELYHFMGXSTFSQYTAVLEISL 596
QK+R +QG MPDG S C G++L+HFMG STFS+YT V +ISL
Sbjct: 115 QKIRISQGNGFMPDGSSRFTCNGKQLFHFMGCSTFSEYTVVADISL 160
Score = 60.5 bits (140), Expect = 9e-10
Identities = 30/43 (69%), Positives = 32/43 (74%)
Frame = +2
Query: 125 STVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITAT 253
ST G+VI C AAVAW A PLSIE I+V PPKA EVRVKI T
Sbjct: 3 STAGQVINCKAAVAWSAKAPLSIETIQVAPPKAHEVRVKILYT 45
>AC006663-4|AAF39899.1| 384|Caenorhabditis elegans Hypothetical
protein H24K24.3a protein.
Length = 384
Score = 87.0 bits (206), Expect = 9e-18
Identities = 39/77 (50%), Positives = 46/77 (59%)
Frame = +1
Query: 256 VCHTDAYTLSGKDPEGVXPVVLXXXXXXXXXXXXXXXTXVKPGDHVVPLXVXQCNTCKFC 435
VCHTDAYTL G DPEG+ PVVL T PGDHVVPL V QC C++C
Sbjct: 47 VCHTDAYTLDGHDPEGLFPVVLGHEGSGIVESVGEGVTGFAPGDHVVPLYVPQCKECEYC 106
Query: 436 XNPKTNLARRFVLLKVN 486
NPKTNL ++ + + N
Sbjct: 107 KNPKTNLCQKIRISQGN 123
Score = 62.9 bits (146), Expect = 2e-10
Identities = 27/46 (58%), Positives = 34/46 (73%)
Frame = +3
Query: 459 QKVRSTQGQRVMPDGXSDSACXGQELYHFMGXSTFSQYTAVLEISL 596
QK+R +QG MPDG S C G++L+HFMG STFS+YT V +ISL
Sbjct: 115 QKIRISQGNGFMPDGSSRFTCNGKQLFHFMGCSTFSEYTVVADISL 160
Score = 60.5 bits (140), Expect = 9e-10
Identities = 30/43 (69%), Positives = 32/43 (74%)
Frame = +2
Query: 125 STVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITAT 253
ST G+VI C AAVAW A PLSIE I+V PPKA EVRVKI T
Sbjct: 3 STAGQVINCKAAVAWSAKAPLSIETIQVAPPKAHEVRVKILYT 45
>AC006663-3|AAL32231.1| 386|Caenorhabditis elegans Hypothetical
protein H24K24.3b protein.
Length = 386
Score = 87.0 bits (206), Expect = 9e-18
Identities = 39/77 (50%), Positives = 46/77 (59%)
Frame = +1
Query: 256 VCHTDAYTLSGKDPEGVXPVVLXXXXXXXXXXXXXXXTXVKPGDHVVPLXVXQCNTCKFC 435
VCHTDAYTL G DPEG+ PVVL T PGDHVVPL V QC C++C
Sbjct: 49 VCHTDAYTLDGHDPEGLFPVVLGHEGSGIVESVGEGVTGFAPGDHVVPLYVPQCKECEYC 108
Query: 436 XNPKTNLARRFVLLKVN 486
NPKTNL ++ + + N
Sbjct: 109 KNPKTNLCQKIRISQGN 125
Score = 62.9 bits (146), Expect = 2e-10
Identities = 27/46 (58%), Positives = 34/46 (73%)
Frame = +3
Query: 459 QKVRSTQGQRVMPDGXSDSACXGQELYHFMGXSTFSQYTAVLEISL 596
QK+R +QG MPDG S C G++L+HFMG STFS+YT V +ISL
Sbjct: 117 QKIRISQGNGFMPDGSSRFTCNGKQLFHFMGCSTFSEYTVVADISL 162
Score = 59.3 bits (137), Expect = 2e-09
Identities = 29/47 (61%), Positives = 33/47 (70%)
Frame = +2
Query: 125 STVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATESAI 265
ST G+VI C AAVAW A PLSIE I+V PPKA EVRVK +A+
Sbjct: 3 STAGQVINCKAAVAWSAKAPLSIETIQVAPPKAHEVRVKFQILYTAV 49
>AC025722-1|AAK68507.1| 554|Caenorhabditis elegans Hypothetical
protein Y50D4C.2 protein.
Length = 554
Score = 85.8 bits (203), Expect = 2e-17
Identities = 37/70 (52%), Positives = 43/70 (61%)
Frame = +1
Query: 256 VCHTDAYTLSGKDPEGVXPVVLXXXXXXXXXXXXXXXTXVKPGDHVVPLXVXQCNTCKFC 435
VCHTDAYTL G DPEG+ PVVL T PGDHVVPL V QC C++C
Sbjct: 220 VCHTDAYTLDGHDPEGLFPVVLGHEGSGIVESVGKGVTGFAPGDHVVPLYVPQCKECEYC 279
Query: 436 XNPKTNLARR 465
NPKTN+ ++
Sbjct: 280 KNPKTNMCQK 289
Score = 62.9 bits (146), Expect = 2e-10
Identities = 27/46 (58%), Positives = 34/46 (73%)
Frame = +3
Query: 459 QKVRSTQGQRVMPDGXSDSACXGQELYHFMGXSTFSQYTAVLEISL 596
QK+R +QG MPDG S C G++L+HFMG STFS+YT V +ISL
Sbjct: 288 QKIRVSQGDGFMPDGTSRFTCNGKQLFHFMGCSTFSEYTVVADISL 333
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 144 LSAWPQSRGKQASRCPSRRLKWTRQKPVKCALR 242
+ A P S G Q +R KW +KP K AL+
Sbjct: 181 IPARPPSPGAQKLHSRLKRSKWLHRKPTKFALK 213
>AC024755-1|AAF59637.2| 369|Caenorhabditis elegans Hypothetical
protein Y34B4A.7 protein.
Length = 369
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = -2
Query: 285 GECIRVSMADSVAVILTRTSPAFGGSTS 202
G CI+VS+ D V VI T AF STS
Sbjct: 314 GSCIKVSITDEVNVIAICTKQAFTDSTS 341
>Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -2
Query: 261 ADSVAVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLPT 130
A S A + T T+ G STS ++ DSG +S T + H + LP+
Sbjct: 4214 ARSHAYLSTATAVFSGASTSAAAADSGANSSTNTTS-HSLVLPS 4256
>Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -2
Query: 261 ADSVAVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLPT 130
A S A + T T+ G STS ++ DSG +S T + H + LP+
Sbjct: 4203 ARSHAYLSTATAVFSGASTSAAAADSGANSSTNTTS-HSLVLPS 4245
>Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -2
Query: 261 ADSVAVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLPT 130
A S A + T T+ G STS ++ DSG +S T + H + LP+
Sbjct: 4203 ARSHAYLSTATAVFSGASTSAAAADSGANSSTNTTS-HSLVLPS 4245
>Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -2
Query: 261 ADSVAVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLPT 130
A S A + T T+ G STS ++ DSG +S T + H + LP+
Sbjct: 4214 ARSHAYLSTATAVFSGASTSAAAADSGANSSTNTTS-HSLVLPS 4256
>Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -2
Query: 261 ADSVAVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLPT 130
A S A + T T+ G STS ++ DSG +S T + H + LP+
Sbjct: 4203 ARSHAYLSTATAVFSGASTSAAAADSGANSSTNTTS-HSLVLPS 4245
>Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -2
Query: 261 ADSVAVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLPT 130
A S A + T T+ G STS ++ DSG +S T + H + LP+
Sbjct: 4203 ARSHAYLSTATAVFSGASTSAAAADSGANSSTNTTS-HSLVLPS 4245
>Z68337-10|CAA92753.1| 647|Caenorhabditis elegans Hypothetical
protein M7.5 protein.
Length = 647
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = +2
Query: 44 CYIIE*ALHSSTIISTFCDWQLSSAVMSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKA 223
C+II +L S+ I W L SA S G AV WE ++ I VD K
Sbjct: 234 CHII--SLRSADSIGIKYTWTLPSAECSADGAQNAVPKAVGWERNANDKLQPISVDLSKE 291
Query: 224 GEVRV 238
+ ++
Sbjct: 292 FDPKI 296
>AL032641-8|CAA21650.1| 647|Caenorhabditis elegans Hypothetical
protein M7.5 protein.
Length = 647
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = +2
Query: 44 CYIIE*ALHSSTIISTFCDWQLSSAVMSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKA 223
C+II +L S+ I W L SA S G AV WE ++ I VD K
Sbjct: 234 CHII--SLRSADSIGIKYTWTLPSAECSADGAQNAVPKAVGWERNANDKLQPISVDLSKE 291
Query: 224 GEVRV 238
+ ++
Sbjct: 292 FDPKI 296
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,040,538
Number of Sequences: 27780
Number of extensions: 219506
Number of successful extensions: 519
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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