Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0443.Seq
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g43940.1 68418.m05376 alcohol dehydrogenase class III / gluta... 74 6e-14
At1g77120.1 68414.m08982 alcohol dehydrogenase (ADH) identical t... 67 7e-12
At1g64710.1 68414.m07337 alcohol dehydrogenase, putative similar... 58 3e-09
At1g22440.1 68414.m02805 alcohol dehydrogenase, putative similar... 56 2e-08
At5g24760.1 68418.m02923 alcohol dehydrogenase, putative similar... 54 1e-07
At4g22110.2 68417.m03197 alcohol dehydrogenase, putative similar... 50 1e-06
At4g22110.1 68417.m03196 alcohol dehydrogenase, putative similar... 50 1e-06
At1g22430.1 68414.m02804 alcohol dehydrogenase, putative similar... 50 2e-06
At1g32780.1 68414.m04041 alcohol dehydrogenase, putative similar... 49 2e-06
At5g42250.1 68418.m05143 alcohol dehydrogenase, putative similar... 45 4e-05
At5g24760.2 68418.m02922 alcohol dehydrogenase, putative similar... 33 0.14
At5g63620.2 68418.m07988 oxidoreductase, zinc-binding dehydrogen... 31 0.58
At5g63620.1 68418.m07987 oxidoreductase, zinc-binding dehydrogen... 31 0.58
At4g39330.1 68417.m05568 mannitol dehydrogenase, putative nearly... 30 1.0
At1g62480.1 68414.m07050 vacuolar calcium-binding protein-relate... 30 1.0
At5g61510.1 68418.m07718 NADP-dependent oxidoreductase, putative... 29 3.1
At4g28080.1 68417.m04027 expressed protein 27 9.5
At2g07676.1 68415.m00907 expressed protein 27 9.5
At1g49730.3 68414.m05576 protein kinase family protein contains ... 27 9.5
At1g49730.2 68414.m05577 protein kinase family protein contains ... 27 9.5
At1g49730.1 68414.m05575 protein kinase family protein contains ... 27 9.5
>At5g43940.1 68418.m05376 alcohol dehydrogenase class III /
glutathione-dependent formaldehyde dehydrogenase /
GSH-FDH (ADHIII) identical to gi:1143388
Length = 379
Score = 74.1 bits (174), Expect = 6e-14
Identities = 32/67 (47%), Positives = 39/67 (58%)
Frame = +1
Query: 256 VCHTDAYTLSGKDPEGVXPVVLXXXXXXXXXXXXXXXTXVKPGDHVVPLXVXQCNTCKFC 435
+CHTDAYT SGKDPEG+ P +L T V+ GDHV+P +C CKFC
Sbjct: 46 LCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFC 105
Query: 436 XNPKTNL 456
+ KTNL
Sbjct: 106 KSGKTNL 112
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/44 (61%), Positives = 35/44 (79%)
Frame = +2
Query: 122 MSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITAT 253
M+T G+VI C AAVA+E KPL IE+++V PP+AGEVR+KI T
Sbjct: 1 MATQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYT 44
Score = 45.2 bits (102), Expect = 3e-05
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +3
Query: 462 KVRSTQGQRVMP-DGXSDSACXGQELYHFMGXSTFSQYTAVLEISL 596
KVRS G +M D S + G+ +YHFMG STFSQYT V ++S+
Sbjct: 115 KVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSV 160
>At1g77120.1 68414.m08982 alcohol dehydrogenase (ADH) identical to
alcohol dehydrogenase GI:469467 from (Arabidopsis
thaliana)
Length = 379
Score = 67.3 bits (157), Expect = 7e-12
Identities = 30/44 (68%), Positives = 36/44 (81%)
Frame = +2
Query: 122 MSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITAT 253
MST G++I+C AAVAWEAGKPL IEE+EV PP+ EVR+KI T
Sbjct: 1 MSTTGQIIRCKAAVAWEAGKPLVIEEVEVAPPQKHEVRIKILFT 44
Score = 48.0 bits (109), Expect = 5e-06
Identities = 21/77 (27%), Positives = 36/77 (46%)
Frame = +1
Query: 256 VCHTDAYTLSGKDPEGVXPVVLXXXXXXXXXXXXXXXTXVKPGDHVVPLXVXQCNTCKFC 435
+CHTD Y K + P + T ++PGDHV+P+ +C C+ C
Sbjct: 46 LCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPIFTGECGECRHC 105
Query: 436 XNPKTNLARRFVLLKVN 486
+ ++N+ LL++N
Sbjct: 106 HSEESNMCD---LLRIN 119
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +3
Query: 471 STQGQRVMPDGXSDSACXGQELYHFMGXSTFSQYTAV 581
+T+ ++ DG S + G+ +YHF+G STFS+YT V
Sbjct: 119 NTERGGMIHDGESRFSINGKPIYHFLGTSTFSEYTVV 155
>At1g64710.1 68414.m07337 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase GI:551257 from [Nicotiana tabacum]
Length = 396
Score = 58.4 bits (135), Expect = 3e-09
Identities = 26/44 (59%), Positives = 34/44 (77%)
Frame = +2
Query: 122 MSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITAT 253
M T GKVI C AAVAW AG+PL +E+++VDPP+ EVR++I T
Sbjct: 17 METQGKVITCKAAVAWGAGEPLVMEDVKVDPPQRLEVRIRILFT 60
Score = 41.5 bits (93), Expect = 4e-04
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +1
Query: 256 VCHTDAYTLSGK-DPEGVXPVVLXXXXXXXXXXXXXXXTXVKPGDHVVPLXVXQCNTCKF 432
+CHTD G+ + + P +L + GDHV+P+ +C C+
Sbjct: 62 ICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEGVEEMMAGDHVLPIFTGECGDCRV 121
Query: 433 CXNPKTNLARRF 468
C NL RF
Sbjct: 122 CKRDGANLCERF 133
Score = 28.3 bits (60), Expect = 4.1
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +3
Query: 534 LYHFMGXSTFSQYTAV 581
+YHF+ STFS+YT +
Sbjct: 159 IYHFLNTSTFSEYTVI 174
>At1g22440.1 68414.m02805 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
esculentum]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 386
Score = 56.0 bits (129), Expect = 2e-08
Identities = 26/42 (61%), Positives = 33/42 (78%)
Frame = +2
Query: 128 TVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITAT 253
T GK I+C AA+ +AG+PL IEEI+VDPP+A EVR+KI T
Sbjct: 7 TEGKPIRCKAAILRKAGEPLVIEEIQVDPPQAYEVRIKILCT 48
Score = 36.7 bits (81), Expect = 0.012
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +1
Query: 256 VCHTDA-YTLSGKDPEGVXPVVLXXXXXXXXXXXXXXXTXVKPGDHVVPLXVXQCNTCKF 432
+CHTD + P P +L K GD V+P+ QC CK
Sbjct: 50 LCHTDVTFWKLDSGPLARFPRILGHEAVGVVESIGEKVDGFKQGDVVLPVFHPQCEECKE 109
Query: 433 CXNPKTNLARRF 468
C +PK+N ++
Sbjct: 110 CISPKSNWCTKY 121
>At5g24760.1 68418.m02923 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase from Solanum tuberosum
[SP|p14673]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 381
Score = 53.6 bits (123), Expect = 1e-07
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = +2
Query: 137 KVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITAT 253
+VI C AAVAW AG+PL +EE+EV PP+ E+R+K+ T
Sbjct: 12 QVITCNAAVAWRAGEPLVMEEVEVSPPQPLEIRIKVVCT 50
Score = 33.1 bits (72), Expect = 0.14
Identities = 15/69 (21%), Positives = 31/69 (44%)
Frame = +1
Query: 256 VCHTDAYTLSGKDPEGVXPVVLXXXXXXXXXXXXXXXTXVKPGDHVVPLXVXQCNTCKFC 435
+C +D LS + + + P + T + GDHV+ + +C +C+ C
Sbjct: 52 LCRSD---LSAWESQSLLPRIFGHEAAGIVESIGEGVTEFEKGDHVLAVFTGECGSCRHC 108
Query: 436 XNPKTNLAR 462
+ K+N+ +
Sbjct: 109 ISGKSNMCQ 117
>At4g22110.2 68417.m03197 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
esculentum]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 389
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/40 (60%), Positives = 30/40 (75%)
Frame = +2
Query: 134 GKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITAT 253
GK I+C AAV+ + G+ L IEEI VDPP+A EVR+KI T
Sbjct: 12 GKPIRCKAAVSRKPGEALVIEEIHVDPPQAYEVRIKIICT 51
Score = 33.1 bits (72), Expect = 0.14
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +1
Query: 256 VCHTD-AYTLSGKDPEGVXPVVLXXXXXXXXXXXXXXXTXVKPGDHVVPLXVXQCNTCKF 432
+CHTD +++ P P +L + GD V+P+ C C+
Sbjct: 53 LCHTDVSFSKIDSGPLARFPRILGHEAVGVIESIGEHVNGFQQGDVVLPVFHPHCEECRD 112
Query: 433 CXNPKTNLARRF 468
C + K+N RF
Sbjct: 113 CKSSKSNWCARF 124
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 525 GQELYHFMGXSTFSQYTAV 581
G+++YHF+ S+FS+YT V
Sbjct: 146 GEDIYHFLFVSSFSEYTVV 164
>At4g22110.1 68417.m03196 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
esculentum]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 389
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/40 (60%), Positives = 30/40 (75%)
Frame = +2
Query: 134 GKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITAT 253
GK I+C AAV+ + G+ L IEEI VDPP+A EVR+KI T
Sbjct: 12 GKPIRCKAAVSRKPGEALVIEEIHVDPPQAYEVRIKIICT 51
Score = 33.1 bits (72), Expect = 0.14
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +1
Query: 256 VCHTD-AYTLSGKDPEGVXPVVLXXXXXXXXXXXXXXXTXVKPGDHVVPLXVXQCNTCKF 432
+CHTD +++ P P +L + GD V+P+ C C+
Sbjct: 53 LCHTDVSFSKIDSGPLARFPRILGHEAVGVIESIGEHVNGFQQGDVVLPVFHPHCEECRD 112
Query: 433 CXNPKTNLARRF 468
C + K+N RF
Sbjct: 113 CKSSKSNWCARF 124
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 525 GQELYHFMGXSTFSQYTAV 581
G+++YHF+ S+FS+YT V
Sbjct: 146 GEDIYHFLFVSSFSEYTVV 164
>At1g22430.1 68414.m02804 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
esculentum]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 388
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/43 (55%), Positives = 30/43 (69%)
Frame = +2
Query: 125 STVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITAT 253
S GK I C AA+ +AG+ L IE+I VDPP+A EVR+KI T
Sbjct: 8 SNEGKPITCKAAICRKAGEALVIEDIHVDPPQAYEVRIKILCT 50
Score = 32.7 bits (71), Expect = 0.19
Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Frame = +1
Query: 256 VCHTD-AYTLSGKDPEGVXPVVLXXXXXXXXXXXXXXXTXVKPGDHVVPLXVXQCNTCKF 432
+CHTD + P P +L K GD V+P+ C CK
Sbjct: 52 LCHTDLTFWKLSFGPISRFPRILGHEAVGVVESIGENVDGFKQGDVVLPVFHPYCEECKD 111
Query: 433 CXNPKTNLARRF 468
C + KTN R+
Sbjct: 112 CKSSKTNWCDRY 123
>At1g32780.1 68414.m04041 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase GB:CAA37333 GI:297178 from
[Solanum tuberosum]; contains Pfam zinc-binding
dehydrogenase domain PF00107
Length = 394
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/39 (64%), Positives = 27/39 (69%)
Frame = +2
Query: 128 TVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKI 244
T GKVI C AAV W PL I+EI VDPP+ EVRVKI
Sbjct: 4 TQGKVITCKAAVVWGPKVPLVIQEICVDPPQKMEVRVKI 42
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +1
Query: 256 VCHTDAYTLSG-KDPEGVXPVVLXXXXXXXXXXXXXXXTXVKPGDHVVPLXVXQCNTCKF 432
+CHTD +G + E P +L VK GD+V+P +C CK
Sbjct: 47 ICHTDLGCWNGTNEAERAFPRILGHEAVGIVESVGEGVKDVKEGDYVIPTFNGECGECKV 106
Query: 433 CXNPKTNLARRF 468
C ++NL R+
Sbjct: 107 CKREESNLCERY 118
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 498 DGXSDSACXGQELYHFMGXSTFSQYTAV 581
DG S + Q +YHF+ STF++YT +
Sbjct: 142 DGGSSQS---QPIYHFLNTSTFTEYTVL 166
>At5g42250.1 68418.m05143 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
esculentum]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 390
Score = 44.8 bits (101), Expect = 4e-05
Identities = 23/48 (47%), Positives = 33/48 (68%)
Frame = +2
Query: 110 SSAVMSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITAT 253
SS+ + K I+C AAV+ +AG+PL +EEI V PP+ EVR++I T
Sbjct: 6 SSSDNKSSHKPIRCKAAVSRKAGEPLVMEEIMVAPPQPFEVRIRIICT 53
Score = 33.9 bits (74), Expect = 0.083
Identities = 18/71 (25%), Positives = 27/71 (38%)
Frame = +1
Query: 256 VCHTDAYTLSGKDPEGVXPVVLXXXXXXXXXXXXXXXTXVKPGDHVVPLXVXQCNTCKFC 435
+CH+D + P P +L V GD V+P + C C C
Sbjct: 55 LCHSDVTFWKLQVPPACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGDCVDC 114
Query: 436 XNPKTNLARRF 468
+ K+NL +F
Sbjct: 115 KSHKSNLCSKF 125
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +3
Query: 525 GQELYHFMGXSTFSQYTAVLEIS 593
G+ L+HF+ S+FS+YT VL+++
Sbjct: 147 GETLFHFLNVSSFSEYT-VLDVA 168
>At5g24760.2 68418.m02922 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase from Solanum tuberosum
[SP|p14673]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 352
Score = 33.1 bits (72), Expect = 0.14
Identities = 15/69 (21%), Positives = 31/69 (44%)
Frame = +1
Query: 256 VCHTDAYTLSGKDPEGVXPVVLXXXXXXXXXXXXXXXTXVKPGDHVVPLXVXQCNTCKFC 435
+C +D LS + + + P + T + GDHV+ + +C +C+ C
Sbjct: 23 LCRSD---LSAWESQSLLPRIFGHEAAGIVESIGEGVTEFEKGDHVLAVFTGECGSCRHC 79
Query: 436 XNPKTNLAR 462
+ K+N+ +
Sbjct: 80 ISGKSNMCQ 88
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 191 IEEIEVDPPKAGEVRVKITAT 253
+EE+EV PP+ E+R+K+ T
Sbjct: 1 MEEVEVSPPQPLEIRIKVVCT 21
>At5g63620.2 68418.m07988 oxidoreductase, zinc-binding dehydrogenase
family protein contains PFAM zinc-binding dehydrogenase
domain PF00107
Length = 427
Score = 31.1 bits (67), Expect = 0.58
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 158 AVAWEAGKPLSIEEIEVDPPKAGEVRVKITA 250
AV E KPL+IEE + PK+ E+ +K A
Sbjct: 59 AVYREPNKPLTIEEFHIPRPKSNEILIKTKA 89
>At5g63620.1 68418.m07987 oxidoreductase, zinc-binding dehydrogenase
family protein contains PFAM zinc-binding dehydrogenase
domain PF00107
Length = 427
Score = 31.1 bits (67), Expect = 0.58
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 158 AVAWEAGKPLSIEEIEVDPPKAGEVRVKITA 250
AV E KPL+IEE + PK+ E+ +K A
Sbjct: 59 AVYREPNKPLTIEEFHIPRPKSNEILIKTKA 89
>At4g39330.1 68417.m05568 mannitol dehydrogenase, putative nearly
identical to SP|P42734, probable mannitol dehydrogenase
Length = 360
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Frame = +1
Query: 256 VCHTDAYTLSGKDPEGVXPVVLXXXXXXXXXXXXXXXTXVKPGDHV-VPLXVXQCNTCKF 432
VCHTD +T+ PVV T K GD V V + C +C+
Sbjct: 49 VCHTDLHTIKNDWGYSYYPVVPGHEIVGIATKVGKNVTKFKEGDRVGVGVISGSCQSCES 108
Query: 433 CXNPKTN 453
C N
Sbjct: 109 CDQDLEN 115
>At1g62480.1 68414.m07050 vacuolar calcium-binding protein-related
contains weak similarity to vacuolar calcium binding
protein [Raphanus sativus] gi|9049359|dbj|BAA99394
Length = 152
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +2
Query: 152 LAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATES--AILTRIHSPEKI 295
+A + E P++ E IEV PPKA E T +ES A +T +P ++
Sbjct: 1 MATIEVEQVTPVAAENIEVPPPKAVESEEVTTVSESLPAPVTESQAPVEV 50
>At5g61510.1 68418.m07718 NADP-dependent oxidoreductase, putative
similar to zeta-crystallin homolog TED2 from Zinnia
elegans [gi:531096]; contains Pfam zinc-binding
dehydrogenase domain PF00107
Length = 406
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 125 STVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVK 241
S+ K++K + + L E++EV PK GE+RVK
Sbjct: 78 SSEKKMVKGIRVYEHGGPEVLKWEDVEVGEPKEGEIRVK 116
>At4g28080.1 68417.m04027 expressed protein
Length = 1660
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +2
Query: 110 SSAVMSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATE 256
SSA + K L+ V+ +AGK S +E+ + PP G + VKI A +
Sbjct: 1186 SSACTEQINKPTPMLSPVSVKAGKLFSYKEVALAPP--GTI-VKIVAEQ 1231
>At2g07676.1 68415.m00907 expressed protein
Length = 118
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 265 YGRLGGRDLNAHFTGFWRV 209
YGR G DL+ H GF+R+
Sbjct: 87 YGRRDGEDLSFHIVGFFRL 105
>At1g49730.3 68414.m05576 protein kinase family protein contains
Pfam PF00069: Protein kinase domain; similar to AtPK2324
(GI:1785621) [Arabidopsis thaliana]; similar to
receptor-like protein kinase (GI:1644291) [Catharanthus
roseus]; similar to somatic embryogenesis receptor-like
kinase (GI:2224911) [Daucus carota]
Length = 394
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 228 SPAFGGSTSISSMDSGLPASHATAAKHLITLPTV 127
SP+ G S S+ DS + S +T HL +PT+
Sbjct: 167 SPSTVGGISPSNSDSQMTTSRSTNPYHLTMVPTI 200
>At1g49730.2 68414.m05577 protein kinase family protein contains
Pfam PF00069: Protein kinase domain; similar to AtPK2324
(GI:1785621) [Arabidopsis thaliana]; similar to
receptor-like protein kinase (GI:1644291) [Catharanthus
roseus]; similar to somatic embryogenesis receptor-like
kinase (GI:2224911) [Daucus carota]
Length = 450
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 228 SPAFGGSTSISSMDSGLPASHATAAKHLITLPTV 127
SP+ G S S+ DS + S +T HL +PT+
Sbjct: 223 SPSTVGGISPSNSDSQMTTSRSTNPYHLTMVPTI 256
>At1g49730.1 68414.m05575 protein kinase family protein contains
Pfam PF00069: Protein kinase domain; similar to AtPK2324
(GI:1785621) [Arabidopsis thaliana]; similar to
receptor-like protein kinase (GI:1644291) [Catharanthus
roseus]; similar to somatic embryogenesis receptor-like
kinase (GI:2224911) [Daucus carota]
Length = 663
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 228 SPAFGGSTSISSMDSGLPASHATAAKHLITLPTV 127
SP+ G S S+ DS + S +T HL +PT+
Sbjct: 223 SPSTVGGISPSNSDSQMTTSRSTNPYHLTMVPTI 256
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,294,607
Number of Sequences: 28952
Number of extensions: 202034
Number of successful extensions: 506
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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