Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0442.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   0.85 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   1.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   1.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   1.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   1.5  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   6.0  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   7.9  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
 Frame = -2

Query: 312  PPQWSDFVLASNIPHSKTNVLYSTVSTLKPIVGIVVTISPNLSLYRIVVL-PAASKPTIN 136
            PP      L S   +S T  L    S ++PI G  +   P    +  V + P   K T+ 
Sbjct: 1396 PPHAPQIALTSTTTNSLTFKLKPHESDVEPIHGYTIHYKPEFGDWETVQIGPTVEKYTLE 1455

Query: 135  ILI 127
             L+
Sbjct: 1456 KLL 1458


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 83  NMFANLFKGLFGKKEMRILMVGLDAA 160
           N+FA+ F  +FGK   +I++ G   A
Sbjct: 384 NIFASYFAYIFGKFACKIMIQGFSYA 409


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 83  NMFANLFKGLFGKKEMRILMVGLDAA 160
           N+FA+ F  +FGK   +I++ G   A
Sbjct: 384 NIFASYFAYIFGKFACKIMIQGFSYA 409


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 83  NMFANLFKGLFGKKEMRILMVGLDAA 160
           N+FA+ F  +FGK   +I++ G   A
Sbjct: 384 NIFASYFAYIFGKFACKIMIQGFSYA 409


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 83  NMFANLFKGLFGKKEMRILMVGLDAA 160
           N+FA+ F  +FGK   +I++ G   A
Sbjct: 384 NIFASYFAYIFGKFACKIMIQGFSYA 409


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 174 IVVLPAASKPTINILISFLPKRPLNKFAN 88
           +V L   S   I ++ISF+ K+    F N
Sbjct: 85  VVSLSGNSAVFIMLIISFMHKKSFKNFVN 113


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 108 PLNKFANIFPILNYYEY 58
           PL K+ NIF I  +Y++
Sbjct: 17  PLVKYLNIFFITPWYDF 33


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,636
Number of Sequences: 336
Number of extensions: 3435
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)