Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0442.Seq
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 217 1e-57
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 161 9e-41
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 94 1e-20
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 76 5e-15
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 40 3e-04
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 38 8e-04
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 37 0.002
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 37 0.003
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 35 0.008
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 35 0.010
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 33 0.042
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 32 0.055
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 31 0.13
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 30 0.29
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce... 29 0.39
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 29 0.68
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 28 0.90
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 28 1.2
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 28 1.2
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 28 1.2
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 28 1.2
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 27 2.7
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 26 3.6
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 3.6
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 3.6
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 26 3.6
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 26 4.8
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 4.8
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 25 6.3
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma... 25 6.3
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 25 8.4
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 25 8.4
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 25 8.4
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc... 25 8.4
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 217 bits (530), Expect = 1e-57
Identities = 99/115 (86%), Positives = 105/115 (91%)
Frame = +1
Query: 250 QNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRD 429
+NISFTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDRERI EA EEL RML+EDELRD
Sbjct: 59 RNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRD 118
Query: 430 AVLLIFANKQDLPNAMNAAEITDKLGRIRCATRNWYIQATCATSGDGLYEGLDWL 594
A+LL+FANKQDLPNAMNAAEITDKLG R WYIQATCATSGDGLYEGL+WL
Sbjct: 119 ALLLVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWL 173
Score = 105 bits (253), Expect = 4e-24
Identities = 50/61 (81%), Positives = 55/61 (90%)
Frame = +2
Query: 77 MGNMFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKT 256
MG + LF+ LFGK+EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY+
Sbjct: 1 MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRN 60
Query: 257 L 259
+
Sbjct: 61 I 61
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 161 bits (390), Expect = 9e-41
Identities = 73/115 (63%), Positives = 88/115 (76%)
Frame = +1
Query: 250 QNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRD 429
+NI F VWDVGGQDKIRPLWRHYF T+GLIFVVDS D RI EAR+EL R++S+ E+RD
Sbjct: 63 KNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRD 122
Query: 430 AVLLIFANKQDLPNAMNAAEITDKLGRIRCATRNWYIQATCATSGDGLYEGLDWL 594
+LL+ ANKQDLP A++ A+ITD L + R W +Q TCA +GDGL EGL WL
Sbjct: 123 CLLLVLANKQDLPGALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWL 177
Score = 87.4 bits (207), Expect = 1e-18
Identities = 41/57 (71%), Positives = 46/57 (80%)
Frame = +2
Query: 89 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKTL 259
F+ F LF KEMRILM+GLDAAGKTTILYKLKL + V TIPT+GFNVETV YK +
Sbjct: 9 FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNI 65
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 94.3 bits (224), Expect = 1e-20
Identities = 40/116 (34%), Positives = 72/116 (62%)
Frame = +1
Query: 247 IQNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELR 426
++ + FT+WD+GGQ +R W++YF++T+ +I+VVDS D R+ E R L +L E++L
Sbjct: 57 VEGLRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLL 116
Query: 427 DAVLLIFANKQDLPNAMNAAEITDKLGRIRCATRNWYIQATCATSGDGLYEGLDWL 594
+L+ ANK D+ A+++ EI+ L + + +W I + A +G + + + WL
Sbjct: 117 FTSILVLANKSDVSGALSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWL 172
Score = 45.6 bits (103), Expect = 6e-06
Identities = 24/48 (50%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Frame = +2
Query: 119 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKTL 259
++E+R+L++GLD AGKTTIL K L E V + PT GF + T+E + L
Sbjct: 14 EREVRVLLLGLDNAGKTTIL-KCLLNEDVNEVSPTFGFQIRTLEVEGL 60
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 75.8 bits (178), Expect = 5e-15
Identities = 35/87 (40%), Positives = 52/87 (59%)
Frame = +1
Query: 247 IQNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELR 426
I N+ FT +D+GG + R LWR YF G++++VD D ER+ E++ EL +L+ +EL
Sbjct: 61 IGNVRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELA 120
Query: 427 DAVLLIFANKQDLPNAMNAAEITDKLG 507
LI NK D P A++ E+ LG
Sbjct: 121 RVPFLILGNKIDAPGAISEDELKAALG 147
Score = 34.3 bits (75), Expect = 0.014
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 122 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI 223
K ++L +GLD AGKTT+L+ LK + PT+
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTL 52
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 39.9 bits (89), Expect = 3e-04
Identities = 16/72 (22%), Positives = 33/72 (45%)
Frame = +1
Query: 250 QNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRD 429
+ + +WD GQ++ R + Y++ G+I V D D++ ++ L + +
Sbjct: 55 KTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQE-IDRYAVEG 113
Query: 430 AVLLIFANKQDL 465
L+ NK D+
Sbjct: 114 VNRLLVGNKSDM 125
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 38.3 bits (85), Expect = 8e-04
Identities = 20/74 (27%), Positives = 35/74 (47%)
Frame = +1
Query: 250 QNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRD 429
+ I +WD GQ+K R + R+Y++ G + V D +++ E L + +
Sbjct: 60 KRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTI 119
Query: 430 AVLLIFANKQDLPN 471
V+L +K DL N
Sbjct: 120 CVVLA-GSKSDLQN 132
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +1
Query: 247 IQNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER--IGEAREELMRMLSEDE 420
+ ++ ++DVGGQ R W + F+N +IF V ND ++ A E R++
Sbjct: 189 LDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDKKLYERAAPERNRLVESIS 248
Query: 421 LRDAVL 438
L D+++
Sbjct: 249 LFDSII 254
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/82 (24%), Positives = 35/82 (42%)
Frame = +1
Query: 253 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDA 432
++ +WD GQ++ + L Y++N I V D + +A+ ++ L
Sbjct: 63 SVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAK-SWIKELQRQAPEGI 121
Query: 433 VLLIFANKQDLPNAMNAAEITD 498
V+ + NK DL A E D
Sbjct: 122 VIALAGNKLDLAQERRAVEKAD 143
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 35.1 bits (77), Expect = 0.008
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = +1
Query: 250 QNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAR 387
+ I +WD GQ++ R + Y++ G++ + D D++ R
Sbjct: 56 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVR 101
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 34.7 bits (76), Expect = 0.010
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = +1
Query: 250 QNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRD 429
+ I +WD GQ++ R + Y++ G + V D + L + L E +
Sbjct: 57 KKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWL-KELREHADSN 115
Query: 430 AVLLIFANKQDL 465
V+++ NK DL
Sbjct: 116 IVIMLVGNKTDL 127
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 32.7 bits (71), Expect = 0.042
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Frame = +1
Query: 262 FTVWDVGGQDKIRPLWRHYFQNTQGLIF----------VVDSNDRERIGEAREELMRMLS 411
+ +DVGGQ R W H F+N L+F +V+ N ++ EA + +
Sbjct: 236 YRFFDVGGQRSERRKWIHCFENVTALLFLVSLAGYDQCLVEDNSGNQMQEALLLWDSICN 295
Query: 412 EDELRDAVLLIFANKQDL 465
++ +++F NK DL
Sbjct: 296 SSWFSESAMILFLNKLDL 313
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 116 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKTLV-LLCGMLEAKT 292
G ++++L++G +GKTTI+ +++L + + ++ ++ LC +LEA
Sbjct: 71 GGNDIKVLLLGAGDSGKTTIMKQMRLLYSPGFSQVVRKQYRVMIFENIISSLCLLLEAMD 130
Query: 293 KSD 301
S+
Sbjct: 131 NSN 133
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 32.3 bits (70), Expect = 0.055
Identities = 16/72 (22%), Positives = 33/72 (45%)
Frame = +1
Query: 250 QNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRD 429
+ + +WD GQ++ R L Y +++ I V D + E+ + + + D
Sbjct: 58 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNT-EKWIEDVRAERGDD 116
Query: 430 AVLLIFANKQDL 465
++++ NK DL
Sbjct: 117 VIIVLVGNKTDL 128
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 31.1 bits (67), Expect = 0.13
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Frame = +1
Query: 253 NISFTVWDVGGQDKIRPLW-----RHYFQNTQGLIFVVDSNDRE 369
N+ +WD GGQ+ + H F+N Q LI+V D RE
Sbjct: 50 NLVLNLWDCGGQEAFMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 29.9 bits (64), Expect = 0.29
Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = +1
Query: 256 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELMRMLSEDELR 426
++ +WD GQ++ + L +++ + V D N+ E + R+E + S
Sbjct: 57 VTLQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPE 116
Query: 427 DAVLLIFANKQDL 465
++ NK D+
Sbjct: 117 TFPFILLGNKVDV 129
>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 388
Score = 29.5 bits (63), Expect = 0.39
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = +1
Query: 223 WL*CGDSRIQNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMR 402
+L CG+ + NIS + G+ + R +W+++ + S ++ +I E + EL R
Sbjct: 286 FLDCGNYKPVNISVAPIEEQGEYESRRVWKNFAVALDAGDYAAASQEKSKIEEGQRELRR 345
Query: 403 MLSE 414
E
Sbjct: 346 QEEE 349
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 28.7 bits (61), Expect = 0.68
Identities = 12/58 (20%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 256 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELMRMLSEDE 420
++ +WD GQ++ + L +++ + V + N+ + + R+E + S+DE
Sbjct: 57 VTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDE 114
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 28.3 bits (60), Expect = 0.90
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 581 PSYSPSPEVAHVAWMYQLRVAQRMRPSL-SVISAAFIAFGRSCLFA 447
P+ SP PEV+H W+ L Q P L S + IAF CL A
Sbjct: 16 PNSSPDPEVSHKLWVSSLNKFQYTLPLLISNFAGLGIAF-IYCLIA 60
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 27.9 bits (59), Expect = 1.2
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -2
Query: 243 TVSTLKPIVGIVVTISPNLSLYRIVVLPAASKPTINILISFLPKRPLNKFANIFPILNYY 64
T T++P V + ++S N +L VVL + + +IN+ L ++ FA +FPI Y
Sbjct: 191 TTETIRPHVRLHNSLSTNAALSASVVLASRLEKSINVFFFIL--FAVHWFA-LFPIFRKY 247
Query: 63 EYNF 52
+ F
Sbjct: 248 IHVF 251
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 256 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 366
I F VWD GQ+K+ L Y+ Q I + D R
Sbjct: 58 ICFNVWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSR 94
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/49 (22%), Positives = 25/49 (51%)
Frame = +1
Query: 244 RIQNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEARE 390
R I+F++WD+GGQ + + + ++F+ D + + + +E
Sbjct: 55 RNTEITFSIWDLGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKE 103
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 27.9 bits (59), Expect = 1.2
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 119 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKT-LVLLCGMLEAK 289
KK + ++G +GKT++ +L E TT+P+I N +Y LV L G AK
Sbjct: 35 KKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPNEAVWKYGAWLVDLPGHPRAK 92
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = -3
Query: 305 SGLILSWPPTSHTV-KLMFCILL 240
SG+ILSW P+S + K++F IL+
Sbjct: 128 SGIILSWSPSSFLLGKIVFLILV 150
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 134 ILMVGLDAAGKTTILYKLKL 193
I+MVGL +GKTT KL L
Sbjct: 104 IMMVGLQGSGKTTTCSKLAL 123
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 122 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI 223
KE+R+++ G GK++++ L + VT+IP +
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQEDNVTSIPKV 35
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 98 LFKGLFGKKEMRILMVGLDAAGKTTI 175
L K ++GK+ + I+ +G AGK+T+
Sbjct: 229 LLKDMYGKEHVNIVFIGHVDAGKSTL 254
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -2
Query: 285 ASNIPHSKTNVLYSTVSTLKPIVGIVVTISPNLSLYRIVVLPAASKPTINILISFL 118
+S+ P+S+ Y+ + L+ +VG+ + S + R LP N+LI L
Sbjct: 502 SSSSPYSRGPYKYNRIENLQMVVGVRASASGSFFAIRNDYLPPPIYKPSNMLIDLL 557
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.8 bits (54), Expect = 4.8
Identities = 20/76 (26%), Positives = 32/76 (42%)
Frame = -2
Query: 273 PHSKTNVLYSTVSTLKPIVGIVVTISPNLSLYRIVVLPAASKPTINILISFLPKRPLNKF 94
P T+ ++ ++T+KPI+ P L L + I +L SF+ PL +
Sbjct: 915 PTKLTHGMFDALNTMKPIISDFTVFEPALHTVENFDLTDCADEQILLLSSFVNFVPLFRK 974
Query: 93 ANIFPILNYYEYNFQK 46
+LN E QK
Sbjct: 975 VIWNLLLNNKEALIQK 990
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +1
Query: 361 DRERIGEAREELMRMLSEDELRDAVL----LIFANKQDLPNAMNAAEITDKLGRIRCATR 528
D E+ + REE +R+L E +DA + + +DL + ++ A+++ K AT
Sbjct: 405 DEEKKKKEREEQVRLLQESADKDAEMNEASTATSENEDLKDDLSLADLSSKKTANSQATE 464
Query: 529 N 531
N
Sbjct: 465 N 465
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +2
Query: 80 GNMFANLFKGLFGKKEMRILMVG--LDAAGKTTI-LYKLKLGEIVTTIPTI 223
GN+FA L + ++ L G L+ + + + LKLGE + T+P I
Sbjct: 456 GNLFARLVSHVLHQRHFYPLFPGGSLEKCNPSNLDIAHLKLGEFLNTMPDI 506
>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = -2
Query: 327 ILEIMPPQWSDFVLASNIPHSK----TNVLYSTVSTLKPIVGIVVTISPNLSL 181
+L+I+ P+W DF+ + S+ V + +T K I+ + I L+L
Sbjct: 336 VLKILNPEWFDFLRQQGVCVSRFESGIRVSFGLYNTSKDIIKFISVIRKGLAL 388
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 119 KKEMRILMVGLDAAGKTTILYKL 187
KK I++VG+ +GKTT + +L
Sbjct: 6 KKPCAIIVVGMAGSGKTTFMQQL 28
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 349 VDSNDRERIGEAREELMRMLSEDE 420
+DS++ E I +A+ E+ LSE+E
Sbjct: 430 IDSDEEETIDDAKSEMFVDLSEEE 453
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 119 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 226
KK++ + ++G AGK++I+ L+ ++ P G
Sbjct: 308 KKQISVGLIGFPNAGKSSIINTLRKKKVCNVAPIPG 343
>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 465
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 307 WRHYFQNTQGLIFVVDSNDRERI 375
W H++ NTQ FV D ND ++
Sbjct: 17 WTHFW-NTQESYFVYDPNDHAKV 38
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,611,354
Number of Sequences: 5004
Number of extensions: 55482
Number of successful extensions: 205
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -