Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0441.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      29   0.45 
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    26   3.2  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   7.3  
SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces...    25   9.7  

>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 193 SNNHSCKENEVTK*SIHCCEMFKTFFRRFIENYLNVE 83
           S+N S   N V   S H      T  R+FIENY ++E
Sbjct: 723 SSNFSSSNNHVLDSSKHTVSSASTSSRKFIENYKSLE 759


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = -2

Query: 232 RIAASR*CRTLNHSNN----HSCKENEVTK*SIHCCEMFKTFFRRFIENYLNVEGKFIV 68
           ++AA    RTL+  N     HSC+E   +K   +   +F +FF    +N+ N+E K I+
Sbjct: 411 KLAAMTGMRTLDLGNPMLSMHSCREMCGSKDFEYAVVLFSSFF----QNFANLEEKIII 465


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 139 CEMFKTFFRRFIENYLN 89
           C+MF    + F+ENY N
Sbjct: 592 CQMFAVILKDFVENYSN 608


>SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 338

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 193 NDSTFYISDSRLYGYYYI 246
           NDS  YI +S ++G++Y+
Sbjct: 143 NDSLGYIFESNVFGHFYL 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,809,007
Number of Sequences: 5004
Number of extensions: 30734
Number of successful extensions: 42
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)