Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0440.Seq
         (558 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1Z9N7 Cluster: CG8585-PE, isoform E; n=18; Pancrustace...    35   1.5  
UniRef50_A0DE76 Cluster: Chromosome undetermined scaffold_47, wh...    33   6.0  

>UniRef50_A1Z9N7 Cluster: CG8585-PE, isoform E; n=18;
           Pancrustacea|Rep: CG8585-PE, isoform E - Drosophila
           melanogaster (Fruit fly)
          Length = 1327

 Score = 34.7 bits (76), Expect = 1.5
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 301 HQCSSLLLYCSVCALLVVYANLI--PLHICWSHQFLRTFWI 417
           H CSS   Y  +C LL++ ANLI  P+ I + +  L T WI
Sbjct: 747 HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 787


>UniRef50_A0DE76 Cluster: Chromosome undetermined scaffold_47, whole
           genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_47,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 253

 Score = 32.7 bits (71), Expect = 6.0
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +2

Query: 104 KCIH-KLKTTQSHKVMQGLLKLMFPFVIPRSYHHGSRCRCLRNCFDYY 244
           KC+  K+K  ++H   Q L++ ++ FVI ++Y++      ++ CF  Y
Sbjct: 201 KCLEMKVKLPKNHPAQQILVQDLYSFVISKNYNNEQAVNFIKKCFREY 248


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 429,599,657
Number of Sequences: 1657284
Number of extensions: 6872783
Number of successful extensions: 18393
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18367
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37071859483
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)