Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0440.Seq
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   4.3  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    25   5.7  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    25   10.0 
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    25   10.0 

>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 376 EAESSSHKQQEARKQSNRVVEKSTDGDN 293
           EA     +Q++  +QSN+ +   TDGDN
Sbjct: 376 EAPIPPRRQKKTDEQSNKKLLNETDGDN 403


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 39  ILTSYKLLKMSQPNEERPSQFLNAFTNL 122
           ++  +KLLK    N   PSQ  ++FTNL
Sbjct: 822 LIAVHKLLKRVSINAVDPSQTTSSFTNL 849


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 107 CIHKLKTTQSHKVMQGLLKLMFPFVIPRSYHH 202
           C HK+K  Q H++      L+F F      HH
Sbjct: 348 CFHKIKAAQWHQISP--RSLLFQFQEQNHIHH 377


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 417 NPKSSQKLMAPTNMKRNQVRINNK 346
           NP S+++L  PT++ RN +   +K
Sbjct: 621 NPFSTRELAEPTDLARNSISTESK 644


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,826,807
Number of Sequences: 5004
Number of extensions: 29915
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)