Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0440.Seq
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803...    29   2.5  
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553...    27   7.7  

>04_04_0141 +
           23079516-23079925,23080006-23080084,23080204-23080326,
           23081655-23081771,23081886-23081945
          Length = 262

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +2

Query: 62  KNESTKRGTAITIFKCIHKLKTTQSHKVMQGLLKLMFPFVIPRSYHHGSRCRCLRNCFDY 241
           K ES      +T+ K       T+  K+  G+LKL+   ++P S    S+   L+   DY
Sbjct: 76  KEESRGNEDRVTLIKDYRGKIETELTKICDGILKLLESHLVPSSTAPESKVFYLKMKGDY 135

Query: 242 Y 244
           Y
Sbjct: 136 Y 136


>02_04_0360 +
           22353057-22353691,22354716-22355144,22355233-22355311,
           22355472-22355594,22356256-22356372,22356636-22356833
          Length = 526

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +2

Query: 62  KNESTKRGTAITIFKCIHKLKTTQSHKVMQGLLKLMFPFVIPRSYHHGSRCRCLRNCFDY 241
           K ES       T+ K       T+  K+  G+LKL+   ++P S    S+   L+   DY
Sbjct: 294 KEESRGNEDRCTLIKEYRGKIETELSKICDGILKLLDSHLVPSSTAPESKVFYLKMKGDY 353

Query: 242 Y 244
           Y
Sbjct: 354 Y 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,453,563
Number of Sequences: 37544
Number of extensions: 185049
Number of successful extensions: 438
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)