Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0440.Seq
         (558 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY928072-1|AAX78396.1| 1319|Drosophila melanogaster hyperpolariz...    35   0.086
AY928071-1|AAX78395.1|  627|Drosophila melanogaster hyperpolariz...    35   0.086
AY928070-1|AAX78394.1|  618|Drosophila melanogaster hyperpolariz...    35   0.086
AY928069-1|AAX78393.1| 1282|Drosophila melanogaster hyperpolariz...    35   0.086
AY060342-1|AAL25381.1|  245|Drosophila melanogaster GH23838p pro...    35   0.086
AF124300-1|AAD42059.1|  945|Drosophila melanogaster putative vol...    35   0.086
AE013599-1869|ABC66060.1|  627|Drosophila melanogaster CG8585-PD...    35   0.086
AE013599-1868|ABC66059.1|  618|Drosophila melanogaster CG8585-PC...    35   0.086
AE013599-1867|ABC66058.1| 1290|Drosophila melanogaster CG8585-PB...    35   0.086
AE013599-1866|ABC66057.1| 1327|Drosophila melanogaster CG8585-PE...    35   0.086
BT001471-1|AAN71226.1| 1048|Drosophila melanogaster LD03769p pro...    28   9.8  
AF247500-1|AAF63388.1| 1048|Drosophila melanogaster kinesin-like...    28   9.8  
AE014134-1877|AAF52943.2| 1048|Drosophila melanogaster CG5300-PA...    28   9.8  

>AY928072-1|AAX78396.1| 1319|Drosophila melanogaster
           hyperpolarization-activated ionchannel variant
           DMIH-A1B2C2 protein.
          Length = 1319

 Score = 34.7 bits (76), Expect = 0.086
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 301 HQCSSLLLYCSVCALLVVYANLI--PLHICWSHQFLRTFWI 417
           H CSS   Y  +C LL++ ANLI  P+ I + +  L T WI
Sbjct: 739 HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 779


>AY928071-1|AAX78395.1|  627|Drosophila melanogaster
           hyperpolarization-activated ionchannel variant
           DMIH-A3B1C1 protein.
          Length = 627

 Score = 34.7 bits (76), Expect = 0.086
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 301 HQCSSLLLYCSVCALLVVYANLI--PLHICWSHQFLRTFWI 417
           H CSS   Y  +C LL++ ANLI  P+ I + +  L T WI
Sbjct: 84  HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 124


>AY928070-1|AAX78394.1|  618|Drosophila melanogaster
           hyperpolarization-activated ionchannel variant
           DMIH-A2B1C1 protein.
          Length = 618

 Score = 34.7 bits (76), Expect = 0.086
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 301 HQCSSLLLYCSVCALLVVYANLI--PLHICWSHQFLRTFWI 417
           H CSS   Y  +C LL++ ANLI  P+ I + +  L T WI
Sbjct: 75  HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 115


>AY928069-1|AAX78393.1| 1282|Drosophila melanogaster
           hyperpolarization-activated ionchannel variant
           DMIH-A1B1C1 protein.
          Length = 1282

 Score = 34.7 bits (76), Expect = 0.086
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 301 HQCSSLLLYCSVCALLVVYANLI--PLHICWSHQFLRTFWI 417
           H CSS   Y  +C LL++ ANLI  P+ I + +  L T WI
Sbjct: 739 HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 779


>AY060342-1|AAL25381.1|  245|Drosophila melanogaster GH23838p
           protein.
          Length = 245

 Score = 34.7 bits (76), Expect = 0.086
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 301 HQCSSLLLYCSVCALLVVYANLI--PLHICWSHQFLRTFWI 417
           H CSS   Y  +C LL++ ANLI  P+ I + +  L T WI
Sbjct: 75  HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 115


>AF124300-1|AAD42059.1|  945|Drosophila melanogaster putative
           voltage- and cyclic nucleotide-gated ion channel
           protein.
          Length = 945

 Score = 34.7 bits (76), Expect = 0.086
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 301 HQCSSLLLYCSVCALLVVYANLI--PLHICWSHQFLRTFWI 417
           H CSS   Y  +C LL++ ANLI  P+ I + +  L T WI
Sbjct: 397 HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 437


>AE013599-1869|ABC66060.1|  627|Drosophila melanogaster CG8585-PD,
           isoform D protein.
          Length = 627

 Score = 34.7 bits (76), Expect = 0.086
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 301 HQCSSLLLYCSVCALLVVYANLI--PLHICWSHQFLRTFWI 417
           H CSS   Y  +C LL++ ANLI  P+ I + +  L T WI
Sbjct: 84  HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 124


>AE013599-1868|ABC66059.1|  618|Drosophila melanogaster CG8585-PC,
           isoform C protein.
          Length = 618

 Score = 34.7 bits (76), Expect = 0.086
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 301 HQCSSLLLYCSVCALLVVYANLI--PLHICWSHQFLRTFWI 417
           H CSS   Y  +C LL++ ANLI  P+ I + +  L T WI
Sbjct: 75  HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 115


>AE013599-1867|ABC66058.1| 1290|Drosophila melanogaster CG8585-PB,
           isoform B protein.
          Length = 1290

 Score = 34.7 bits (76), Expect = 0.086
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 301 HQCSSLLLYCSVCALLVVYANLI--PLHICWSHQFLRTFWI 417
           H CSS   Y  +C LL++ ANLI  P+ I + +  L T WI
Sbjct: 747 HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 787


>AE013599-1866|ABC66057.1| 1327|Drosophila melanogaster CG8585-PE,
           isoform E protein.
          Length = 1327

 Score = 34.7 bits (76), Expect = 0.086
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 301 HQCSSLLLYCSVCALLVVYANLI--PLHICWSHQFLRTFWI 417
           H CSS   Y  +C LL++ ANLI  P+ I + +  L T WI
Sbjct: 747 HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 787


>BT001471-1|AAN71226.1| 1048|Drosophila melanogaster LD03769p
           protein.
          Length = 1048

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 409 KFAKTDGSNKYEAESSSHKQQEARK 335
           KFAK     K   +S+ HKQ+E+RK
Sbjct: 684 KFAKVKLMKKMSQQSNRHKQEESRK 708


>AF247500-1|AAF63388.1| 1048|Drosophila melanogaster kinesin-like
           protein protein.
          Length = 1048

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 409 KFAKTDGSNKYEAESSSHKQQEARK 335
           KFAK     K   +S+ HKQ+E+RK
Sbjct: 684 KFAKVKLMKKMSQQSNRHKQEESRK 708


>AE014134-1877|AAF52943.2| 1048|Drosophila melanogaster CG5300-PA
           protein.
          Length = 1048

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 409 KFAKTDGSNKYEAESSSHKQQEARK 335
           KFAK     K   +S+ HKQ+E+RK
Sbjct: 684 KFAKVKLMKKMSQQSNRHKQEESRK 708


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,190,048
Number of Sequences: 53049
Number of extensions: 348387
Number of successful extensions: 1083
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2151905496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)