Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0440.Seq
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68118-2|CAA92188.2|  165|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z70683-1|CAA94590.1|  511|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z79601-6|CAB01887.1|  872|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z79596-9|CAB01859.1|  872|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z81462-7|CAB03845.1| 1008|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z81457-12|CAB03819.1| 1008|Caenorhabditis elegans Hypothetical p...    27   9.1  
AF286900-1|AAG01333.1| 1008|Caenorhabditis elegans sex determini...    27   9.1  

>Z68118-2|CAA92188.2|  165|Caenorhabditis elegans Hypothetical
           protein R01E6.2 protein.
          Length = 165

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +2

Query: 158 LKLMFPFVIPRSYHHGSRCRCL 223
           L L+FPFV+P +Y++G+   C+
Sbjct: 8   LALLFPFVLPFNYNNGASAACI 29


>U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical
           protein T04G9.6 protein.
          Length = 601

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 128 TQSHKVMQGLLKLMFPFVIPRSY 196
           ++ HK+ + L   +FPF IPRSY
Sbjct: 514 SRCHKITKDLSNSLFPFCIPRSY 536


>Z70683-1|CAA94590.1|  511|Caenorhabditis elegans Hypothetical
           protein F13B12.1 protein.
          Length = 511

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = -3

Query: 400 KTDGSNKYEAESSSHKQQEARKQSNRVVEKSTDGDN 293
           K+ G+N+Y+      +++  + ++NR+V+ S +G N
Sbjct: 473 KSTGNNRYDQTFRDFQERTKKSKANRIVKVSLEGRN 508


>Z79601-6|CAB01887.1|  872|Caenorhabditis elegans Hypothetical
           protein K09A9.6 protein.
          Length = 872

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 394 DGSNKYEAESSSHKQQEARKQSNRVVEKSTDGDN 293
           D  N  + E   +K+     +S++VVE+  DGD+
Sbjct: 295 DDGNDDDEEDGKNKKTSVEAKSDKVVEEKNDGDD 328


>Z79596-9|CAB01859.1|  872|Caenorhabditis elegans Hypothetical
           protein K09A9.6 protein.
          Length = 872

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 394 DGSNKYEAESSSHKQQEARKQSNRVVEKSTDGDN 293
           D  N  + E   +K+     +S++VVE+  DGD+
Sbjct: 295 DDGNDDDEEDGKNKKTSVEAKSDKVVEEKNDGDD 328


>Z81462-7|CAB03845.1| 1008|Caenorhabditis elegans Hypothetical
           protein C04H5.6 protein.
          Length = 1008

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 441 LKMKILPPNPKSSQKLMAPTNMKRNQVRIN 352
           L+ KI  P PK ++K++  TN+    V I+
Sbjct: 621 LQAKIFEPTPKDARKVVLATNIAETSVTID 650


>Z81457-12|CAB03819.1| 1008|Caenorhabditis elegans Hypothetical
           protein C04H5.6 protein.
          Length = 1008

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 441 LKMKILPPNPKSSQKLMAPTNMKRNQVRIN 352
           L+ KI  P PK ++K++  TN+    V I+
Sbjct: 621 LQAKIFEPTPKDARKVVLATNIAETSVTID 650


>AF286900-1|AAG01333.1| 1008|Caenorhabditis elegans sex determining
           protein MOG-4 protein.
          Length = 1008

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 441 LKMKILPPNPKSSQKLMAPTNMKRNQVRIN 352
           L+ KI  P PK ++K++  TN+    V I+
Sbjct: 621 LQAKIFEPTPKDARKVVLATNIAETSVTID 650


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,278,238
Number of Sequences: 27780
Number of extensions: 176127
Number of successful extensions: 497
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)