Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0440.Seq
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61010.2 68414.m06870 cleavage and polyadenylation specificit...    29   1.6  
At1g61010.1 68414.m06869 cleavage and polyadenylation specificit...    29   1.6  
At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein...    28   4.9  
At3g05110.1 68416.m00555 hypothetical protein                          27   6.4  
At2g34280.1 68415.m04194 S locus F-box-related / SLF-related con...    27   8.5  

>At1g61010.2 68414.m06870 cleavage and polyadenylation specificity
           factor, putative similar to cleavage and polyadenylation
           specificity factor 73 kDa subunit [Homo sapiens]
           SWISS-PROT:Q9UKF6
          Length = 693

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 462 DLSNQIRLKMKILPPNPKSSQKLMAPTNMKRNQVRINNKK 343
           + +  +RLK K+L   P  + K+M P N +  ++  N++K
Sbjct: 430 EANEMMRLKQKLLTEFPDGNTKIMTPKNCESVEMYFNSEK 469


>At1g61010.1 68414.m06869 cleavage and polyadenylation specificity
           factor, putative similar to cleavage and polyadenylation
           specificity factor 73 kDa subunit [Homo sapiens]
           SWISS-PROT:Q9UKF6
          Length = 693

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 462 DLSNQIRLKMKILPPNPKSSQKLMAPTNMKRNQVRINNKK 343
           + +  +RLK K+L   P  + K+M P N +  ++  N++K
Sbjct: 430 EANEMMRLKQKLLTEFPDGNTKIMTPKNCESVEMYFNSEK 469


>At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 735

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 185 PRSYHHGSRCRCLRNCFDYY*NCS 256
           P+ YH+G +    RNCF +   CS
Sbjct: 662 PKCYHYGVQGHIKRNCFRFIRECS 685


>At3g05110.1 68416.m00555 hypothetical protein
          Length = 372

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 557 LTEQXTSNDNDKQYDSADKNNSSTXT*ENGHE 462
           LT+Q   ND DK+ DSA   ++S    EN  +
Sbjct: 123 LTQQRNHNDEDKEKDSASVLSASVQIIENDED 154


>At2g34280.1 68415.m04194 S locus F-box-related / SLF-related
           contains Pfam PF00646: F-box domain; contains weak hit
           to TIGRFAM TIGR01640 : F-box protein interaction domain;
           weakly similar to  self-incompatibility (S-) locus F-box
           (GI:29420811) [Prunus mume]
          Length = 391

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 536 NDNDKQYDSADKNNSS 489
           ND+D+ YD  DKNN S
Sbjct: 179 NDDDEDYDDEDKNNIS 194


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,442,882
Number of Sequences: 28952
Number of extensions: 154692
Number of successful extensions: 441
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)