Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0439.Seq
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   6.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   6.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.2  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -2

Query: 379 KSTMEDEKLKEKISDSDKQTILDKCN 302
           + +++ EK+K  +S    +T+  KCN
Sbjct: 331 RCSVKREKIKISVSYPSTETLNTKCN 356


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -1

Query: 323 DHPRQVQRHHQVAGFQPTGRQGGYEHKQKELEGICNPIITK 201
           +HP Q Q+H+  A   P   Q   +  Q+  +  C+P + +
Sbjct: 19  EHPHQHQQHYGAAVQVPQQTQSVQQQSQQAGDP-CDPSLLR 58


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/39 (20%), Positives = 19/39 (48%)
 Frame = -1

Query: 455 YRXEDDKQKETIQAKNALESYLLQHEVYHGG*EAQGKDL 339
           +   DD+++ ++      E+    H + HG  +++  DL
Sbjct: 58  FEGHDDREQPSVYPLLRFENPETHHPIRHGRRQSRSMDL 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,997
Number of Sequences: 438
Number of extensions: 3002
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)