Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0437.Seq
         (568 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DC0CD1 Cluster: UPI0000DC0CD1 related cluster; n...    38   0.12 
UniRef50_Q4X807 Cluster: Putative uncharacterized protein; n=1; ...    37   0.38 
UniRef50_UPI0000DC1FED Cluster: UPI0000DC1FED related cluster; n...    36   0.50 
UniRef50_Q58LI8 Cluster: Possible dioxygenase; n=1; Cyanophage P...    36   0.87 
UniRef50_Q8NH31 Cluster: Seven transmembrane helix receptor; n=1...    36   0.87 
UniRef50_UPI00006A2C7F Cluster: UPI00006A2C7F related cluster; n...    34   2.0  
UniRef50_UPI0000DC0F0D Cluster: UPI0000DC0F0D related cluster; n...    34   2.0  
UniRef50_UPI000069DB5B Cluster: UPI000069DB5B related cluster; n...    33   3.5  
UniRef50_A0ZIT6 Cluster: Transferase, hexapeptide repeat family ...    33   6.2  
UniRef50_UPI0000F30DD5 Cluster: UPI0000F30DD5 related cluster; n...    32   8.1  

>UniRef50_UPI0000DC0CD1 Cluster: UPI0000DC0CD1 related cluster; n=1;
           Rattus norvegicus|Rep: UPI0000DC0CD1 UniRef100 entry -
           Rattus norvegicus
          Length = 270

 Score = 38.3 bits (85), Expect = 0.12
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
 Frame = +3

Query: 90  YIECYCTVKLYIHVPAHGARPITKH*IITYINSER--NPHLH--GHQYKTTDTYLLTHNC 257
           YI  Y  +  ++HV  H +  I KH   TY ++ +  + H+H   H Y   DT+   H C
Sbjct: 91  YIHMYINMYTHMHVYKHVSIYIYKHAYTTYTDAHKHISTHMHVFKHVYAHIDTHTQMHMC 150

Query: 258 PYESVKFEPNTRTVLKTNDNS 320
            +E      +T T   T+ ++
Sbjct: 151 RHECTHTHTHTHTHTHTDTDT 171


>UniRef50_Q4X807 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 104

 Score = 36.7 bits (81), Expect = 0.38
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = -3

Query: 344 CAIFYNSNTIVICF*HCACVWLEFYRFVGTVVCK*ICVRCFVLMSV*MGITLRIDVCNYL 165
           C   Y    + +C   C C+++  Y +V   VC  +CV  +V M + M + + + VC Y 
Sbjct: 18  CVCMYICVYVCVCVCMCVCMYVCVYAYVCMYVC--VCVCMYVCMRLYMYVCMPMYVCMY- 74

Query: 164 MFCYRSGTVC 135
           ++ Y    VC
Sbjct: 75  VYVYVCMCVC 84


>UniRef50_UPI0000DC1FED Cluster: UPI0000DC1FED related cluster; n=1;
           Rattus norvegicus|Rep: UPI0000DC1FED UniRef100 entry -
           Rattus norvegicus
          Length = 239

 Score = 36.3 bits (80), Expect = 0.50
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
 Frame = +3

Query: 36  ETDLLYNNNHNHTKH*SYYIECYCT-----VKLYIHVPAHGARPITKH*IITYINSERNP 200
           E+D  Y + H HT    Y     CT     V  Y+H+  H       H I  ++++  + 
Sbjct: 63  ESDFTYTHTHTHTHIYIYIYTLMCTHLHTHVHTYMHIHTH--MYTHTHIIYMHVHTHIHT 120

Query: 201 HLHGHQYKTTDTYLLTHNCPY 263
           H+H H Y  +  +  T+ C Y
Sbjct: 121 HVHIHTYLQSCAHTHTYICIY 141



 Score = 36.3 bits (80), Expect = 0.50
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +3

Query: 90  YIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHLHGHQYKTTDT 236
           Y+  Y  V +Y H   H      KH   TYI++  N H+H H YK T T
Sbjct: 194 YVFVYMHVCMYTHTNMHIHTHTYKH---TYIHTHTNTHIHIHTYKHTHT 239


>UniRef50_Q58LI8 Cluster: Possible dioxygenase; n=1; Cyanophage
           P-SSM4|Rep: Possible dioxygenase - Cyanophage P-SSM4
          Length = 196

 Score = 35.5 bits (78), Expect = 0.87
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 183 NSERNPHLHGHQYKTTDTYLLTHNCPYESVK 275
           N ER PH    Q   T+ ++L HNC YE +K
Sbjct: 44  NQERKPHQRKDQCLATEDFILDHNCGYEYMK 74


>UniRef50_Q8NH31 Cluster: Seven transmembrane helix receptor; n=1;
           Homo sapiens|Rep: Seven transmembrane helix receptor -
           Homo sapiens (Human)
          Length = 346

 Score = 35.5 bits (78), Expect = 0.87
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
 Frame = -3

Query: 383 CACVENSSFKTSHCAIFYNSNTIVICF*HCACVWLEFYRFVGTVVCK*ICVRCFVLMSV* 204
           C CV  S    S C   Y    + IC   C C+ +     +   V   +CV   V + V 
Sbjct: 5   CDCV--SCVSVSVCLYLYVC--VCICVSVCVCICVSVCVCICVCVSVFVCVCICVCVCVC 60

Query: 203 MGITLRIDVCNYLMFCYRSGTVCWDVNVKLY-----CTITFDVVALMFCM 69
           + + + I VC YL  C    +VC  V+V +Y     C   +  V++  C+
Sbjct: 61  VSMCVSISVCVYLCLCV-CVSVCVYVSVCMYLCVFLCVCVYVSVSVCLCV 109


>UniRef50_UPI00006A2C7F Cluster: UPI00006A2C7F related cluster; n=1;
           Xenopus tropicalis|Rep: UPI00006A2C7F UniRef100 entry -
           Xenopus tropicalis
          Length = 312

 Score = 34.3 bits (75), Expect = 2.0
 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
 Frame = -3

Query: 377 CVENSSFKTSHCAIFYNSNTIVICF*HCACVWLEFYRFVGTVVCK*ICVRCFVLMSV*MG 198
           C  +++  T HC++       V C  H AC  +  +  V T VC  + V C V  +V M 
Sbjct: 212 CSVHTACMTVHCSVHTTVCMTVHCSVHTAC--MTVHCRVHTTVC--MTVHCSVHTTVCMT 267

Query: 197 I--TLRIDVCNYLMFCYRSGTVCWDVNVKLYCTITFDV 90
           +  ++   VC   + C    TVC +V+  ++ T+  +V
Sbjct: 268 VHCSVHTTVC-MTVHCRVHTTVCMNVHCSVHTTVCMNV 304


>UniRef50_UPI0000DC0F0D Cluster: UPI0000DC0F0D related cluster; n=1;
           Rattus norvegicus|Rep: UPI0000DC0F0D UniRef100 entry -
           Rattus norvegicus
          Length = 230

 Score = 34.3 bits (75), Expect = 2.0
 Identities = 21/71 (29%), Positives = 33/71 (46%)
 Frame = +3

Query: 51  YNNNHNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHLHGHQYKTT 230
           + + H HT H SY   C+ +VK + HV        T     T++  + + H H H    T
Sbjct: 133 HTHTHTHT-HTSYSHICHISVKDFTHVCKISTHTHTHTHTHTHLTKQTHRHTHTH----T 187

Query: 231 DTYLLTHNCPY 263
            T+  TH+ P+
Sbjct: 188 HTHTHTHHTPH 198


>UniRef50_UPI000069DB5B Cluster: UPI000069DB5B related cluster; n=1;
           Xenopus tropicalis|Rep: UPI000069DB5B UniRef100 entry -
           Xenopus tropicalis
          Length = 372

 Score = 33.5 bits (73), Expect = 3.5
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +3

Query: 51  YNNNHNHTKH*SY-YIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHLHGHQYKT 227
           Y + H HT   +Y +   Y     YIH   H    I  + + T+I++  + H+H + +  
Sbjct: 22  YIHTHTHTHTHTYIHTHTYTHTHAYIHTYTHTHTNIHTY-LHTHIHTHTHTHIHTYTHIH 80

Query: 228 TDTYLLTHN 254
           T TY+ T +
Sbjct: 81  THTYIHTQS 89


>UniRef50_A0ZIT6 Cluster: Transferase, hexapeptide repeat family
           protein; n=1; Nodularia spumigena CCY 9414|Rep:
           Transferase, hexapeptide repeat family protein -
           Nodularia spumigena CCY 9414
          Length = 209

 Score = 32.7 bits (71), Expect = 6.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 138 VLGRECKALLYNNIRCSSSNVLYDCDCYCTVN 43
           +LG++C      +IRCS S+ ++D D  C +N
Sbjct: 130 ILGKDCLVSYEVDIRCSDSHAVFDQDTKCRIN 161


>UniRef50_UPI0000F30DD5 Cluster: UPI0000F30DD5 related cluster; n=1;
           Bos taurus|Rep: UPI0000F30DD5 UniRef100 entry - Bos
           Taurus
          Length = 403

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
 Frame = +3

Query: 102 YCTVKLYIHVPAHGARPITKH*-IITYINSERNPHLHGHQYKTTDTYLLTHNCPYE---- 266
           +  + LY HV  H    +  H  + T+I +    H H H +  T T+ LTH   +     
Sbjct: 267 FLCIYLYTHVYVHVCICVHTHVHVCTHIPAHIGRHTHTHTHTHTHTHTLTHRFFHAFYHI 326

Query: 267 --SVKFEPNTRTVLKTNDNSIGIVEDCAMRGFK-RRILHART 383
             S+ F+P+T T ++   ++         RG +    LH +T
Sbjct: 327 IFSLLFKPHTVTAMRAQMHAQPHTRTPYTRGHRAHTALHTQT 368


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 504,846,523
Number of Sequences: 1657284
Number of extensions: 10051048
Number of successful extensions: 27335
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 24561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27089
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38321472724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)