Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0437.Seq
         (568 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   5.6  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    21   5.6  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   7.3  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 555 QDEPEREKEKRKSLTI 508
           QDEPE    K  S+T+
Sbjct: 27  QDEPENLSNKSNSITV 42


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 3/20 (15%)
 Frame = -3

Query: 158 CYRSGTV---CWDVNVKLYC 108
           C+   T+   CW + V++YC
Sbjct: 48  CFLLSTILGTCWIIYVRIYC 67


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 558 DQDEPEREKEKRKSLTI 508
           D+DE  ++++K+K  TI
Sbjct: 253 DEDEDTKKEDKKKKKTI 269


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,957
Number of Sequences: 336
Number of extensions: 2768
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)