Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0437.Seq
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    31   0.16 
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    26   3.4  
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    25   7.7  

>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 369 LHARTLRTPRYSMSWHSLINHNSLQLI 449
           LH  +L T RY+MSW   + H +L+ I
Sbjct: 161 LHVGSLLTTRYAMSWEQSVYHEALEWI 187


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -1

Query: 352 PLIAQSSTIPILLSFVFSTVRV-FGSNFTDS*GQ--LCVSKYVSVVLY*CPCRWGL 194
           P+I   S       F+F+     + S F D  G+  +C+   +SVV+  CPC  GL
Sbjct: 436 PVIVALSISTFTFWFLFTKYSSKYPSVFDDPMGKFAVCLKLTISVVVVACPCALGL 491


>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 240 LLTHNCPYESVKFEPNTRTVLKTNDNSIGIV 332
           +L H     ++ F P T+ +L  +DN +G +
Sbjct: 73  VLQHGAGSSAMSFAPVTQELLSNSDNKVGFL 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,137,927
Number of Sequences: 5004
Number of extensions: 44069
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)