BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0437.Seq (568 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_33554| Best HMM Match : Sushi (HMM E-Value=0.00055) 37 0.010 SB_52009| Best HMM Match : Plasmodium_HRP (HMM E-Value=7.9) 37 0.010 SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 30 1.5 SB_28078| Best HMM Match : SGS (HMM E-Value=1.5) 29 2.6 SB_51910| Best HMM Match : ig (HMM E-Value=4.9e-05) 28 6.1 SB_41963| Best HMM Match : Metallothio (HMM E-Value=3.7) 28 6.1 SB_14757| Best HMM Match : DUF468 (HMM E-Value=6.5) 27 8.1 SB_36564| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1 >SB_33554| Best HMM Match : Sushi (HMM E-Value=0.00055) Length = 685 Score = 37.1 bits (82), Expect = 0.010 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Frame = +3 Query: 114 KLYIHVPAHG-ARPITKH*IITYINSERNPHLHGHQYKTTDTYLLTHNCPY 263 ++++H P H AR T+ TY + H+H H+Y T+ T C Y Sbjct: 263 QMHVHAPGHANARTRTQARKCTYTHPGTQMHVHAHKYANAHTHTQTRKCTY 313 Score = 31.1 bits (67), Expect = 0.66 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Frame = +3 Query: 114 KLYIHVPAH-GARPITKH*IITYINSERNPHLHGHQYKTTDTYLLTHNCPY 263 ++ +H P H AR T+ TY + + H+H +Y T H C Y Sbjct: 368 QINVHAPRHVNARTRTQTLKCTYTHPDTQIHVHAPRYGNARTRTQAHKCTY 418 >SB_52009| Best HMM Match : Plasmodium_HRP (HMM E-Value=7.9) Length = 231 Score = 37.1 bits (82), Expect = 0.010 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Frame = +3 Query: 114 KLYIHVPAHG-ARPITKH*IITYINSERNPHLHGHQYKTTDTYLLTHNCPY 263 ++++H P H AR T+ TY + H+H H+Y T+ T C Y Sbjct: 38 QMHVHAPGHANARTRTQARKCTYTHPGTQMHVHAHKYANAHTHTQTRKCTY 88 >SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0) Length = 897 Score = 29.9 bits (64), Expect = 1.5 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = -2 Query: 159 LLSVWHRVLGRECKALLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCGMS 13 L SV + + ++LY+ I C S+VLYD DC + L+ + C +S Sbjct: 221 LSSVLYDAIDCRLSSVLYDAIDCRLSDVLYDAIDCRLSGVLYDAIDCRLS 270 Score = 29.5 bits (63), Expect = 2.0 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -2 Query: 159 LLSVWHRVLGRECKALLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCGMS 13 L V + L ++LY+ I C S+VLYD DC + L+ + C +S Sbjct: 65 LSCVLYDALDCRLSSVLYDAIDCRLSSVLYDAIDCRLSCVLYDAIDCRLS 114 Score = 29.5 bits (63), Expect = 2.0 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -2 Query: 159 LLSVWHRVLGRECKALLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCGMS 13 L SV + + +LY+ I C S+VLYD DC + L+ + C +S Sbjct: 89 LSSVLYDAIDCRLSCVLYDAIDCRLSSVLYDAIDCRLSDVLYDAIDCRLS 138 Score = 28.7 bits (61), Expect = 3.5 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%) Frame = -2 Query: 114 LLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCGMS 13 +LY+ I C S VLYD DC + L++ + C +S Sbjct: 8 VLYDAIDCRLSCVLYDAIDCRLSCVLYVAIDCRLS 42 Score = 28.7 bits (61), Expect = 3.5 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Frame = -2 Query: 159 LLSVWHRVLGRECKALLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCGMS 13 L V + + +LY+ I C S VLYD DC + L++ + C +S Sbjct: 137 LSGVLYDAIDCRLSGVLYDAIDCRLSWVLYDAIDCRLSCVLYVAIDCRLS 186 Score = 28.7 bits (61), Expect = 3.5 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -2 Query: 159 LLSVWHRVLGRECKALLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCGMS 13 L V + L ++LY+ I C S+VLYD DC + L+ + C +S Sbjct: 209 LSCVLYDALDCRLSSVLYDAIDCRLSSVLYDAIDCRLSDVLYDAIDCRLS 258 Score = 28.3 bits (60), Expect = 4.6 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Frame = -2 Query: 159 LLSVWHRVLGRECKALLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCGMS 13 L SV + + +LY+ I C S VLYD DC + L+ + C +S Sbjct: 113 LSSVLYDAIDCRLSDVLYDAIDCRLSGVLYDAIDCRLSGVLYDAIDCRLS 162 >SB_28078| Best HMM Match : SGS (HMM E-Value=1.5) Length = 934 Score = 29.1 bits (62), Expect = 2.6 Identities = 22/86 (25%), Positives = 36/86 (41%) Frame = +2 Query: 203 STRTSVQNNGHIFTYTQLSLRIGKIRAKHTHSAKNK*Q*YWNCRRLRNERF*KKNSPRTH 382 S+++ +N+ I + +RI A N+ YWN R R+ R + +SPR Sbjct: 70 SSQSHQENHNVITQLIEDGIRINNDSDSDDERAINRS--YWNSGR-RSPRHSRPSSPRCR 126 Query: 383 TTYPEVLNVLALTN*SQQPTAHRVPP 460 T + +T+ S P PP Sbjct: 127 TPRNNIFTTPMITSTSASPRGSMAPP 152 >SB_51910| Best HMM Match : ig (HMM E-Value=4.9e-05) Length = 562 Score = 27.9 bits (59), Expect = 6.1 Identities = 10/30 (33%), Positives = 17/30 (56%) Frame = -1 Query: 409 DIEYLGVRSVRAWRILLLKPLIAQSSTIPI 320 D+E LG R+ W L+L P++ + + I Sbjct: 344 DLESLGARNATGWTDLMLNPIVEKDKEVRI 373 >SB_41963| Best HMM Match : Metallothio (HMM E-Value=3.7) Length = 167 Score = 27.9 bits (59), Expect = 6.1 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%) Frame = -3 Query: 401 VPRGT*CACVENSSFKTSH---CAIFYNSNTIVICF*HCACVWLEFYRFVGTVVCK*IC- 234 + GT CA V + H CAI + + ++C+ CA V V C +C Sbjct: 64 IVHGTKCAIVHGTKCAIVHGTKCAIVHGTQCAIVCWTKCAIVHGTKCAIVHGTKCAIVCW 123 Query: 233 VRCFVL 216 +C ++ Sbjct: 124 TKCAIV 129 >SB_14757| Best HMM Match : DUF468 (HMM E-Value=6.5) Length = 198 Score = 27.5 bits (58), Expect = 8.1 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%) Frame = +3 Query: 117 LYIHVPAHGARPI-TKH*IITYINSERNPHLHGHQYKTTDTYLLTHNCPY 263 +++H P H T+ TY + + H+H +Y T H C Y Sbjct: 112 MHVHAPRHANTCTRTQTRKCTYTHPDTQIHVHAPRYGNARTRTQAHKCTY 161 >SB_36564| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 422 Score = 27.5 bits (58), Expect = 8.1 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +1 Query: 172 LHTSILSVIPIYTDISTKQRTHIYLHTTV 258 L TS ++ P TDI Q +H Y H T+ Sbjct: 39 LRTSRYNIHPAITDIPLLQTSHYYRHPTI 67 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,506,703 Number of Sequences: 59808 Number of extensions: 354476 Number of successful extensions: 1011 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 847 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1001 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1337207630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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