Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0437.Seq
         (568 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33554| Best HMM Match : Sushi (HMM E-Value=0.00055)                 37   0.010
SB_52009| Best HMM Match : Plasmodium_HRP (HMM E-Value=7.9)            37   0.010
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 30   1.5  
SB_28078| Best HMM Match : SGS (HMM E-Value=1.5)                       29   2.6  
SB_51910| Best HMM Match : ig (HMM E-Value=4.9e-05)                    28   6.1  
SB_41963| Best HMM Match : Metallothio (HMM E-Value=3.7)               28   6.1  
SB_14757| Best HMM Match : DUF468 (HMM E-Value=6.5)                    27   8.1  
SB_36564| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_33554| Best HMM Match : Sushi (HMM E-Value=0.00055)
          Length = 685

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 114 KLYIHVPAHG-ARPITKH*IITYINSERNPHLHGHQYKTTDTYLLTHNCPY 263
           ++++H P H  AR  T+    TY +     H+H H+Y    T+  T  C Y
Sbjct: 263 QMHVHAPGHANARTRTQARKCTYTHPGTQMHVHAHKYANAHTHTQTRKCTY 313



 Score = 31.1 bits (67), Expect = 0.66
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +3

Query: 114 KLYIHVPAH-GARPITKH*IITYINSERNPHLHGHQYKTTDTYLLTHNCPY 263
           ++ +H P H  AR  T+    TY + +   H+H  +Y    T    H C Y
Sbjct: 368 QINVHAPRHVNARTRTQTLKCTYTHPDTQIHVHAPRYGNARTRTQAHKCTY 418


>SB_52009| Best HMM Match : Plasmodium_HRP (HMM E-Value=7.9)
          Length = 231

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 114 KLYIHVPAHG-ARPITKH*IITYINSERNPHLHGHQYKTTDTYLLTHNCPY 263
           ++++H P H  AR  T+    TY +     H+H H+Y    T+  T  C Y
Sbjct: 38  QMHVHAPGHANARTRTQARKCTYTHPGTQMHVHAHKYANAHTHTQTRKCTY 88


>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 897

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -2

Query: 159 LLSVWHRVLGRECKALLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCGMS 13
           L SV +  +     ++LY+ I C  S+VLYD  DC  +  L+  + C +S
Sbjct: 221 LSSVLYDAIDCRLSSVLYDAIDCRLSDVLYDAIDCRLSGVLYDAIDCRLS 270



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 159 LLSVWHRVLGRECKALLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCGMS 13
           L  V +  L     ++LY+ I C  S+VLYD  DC  +  L+  + C +S
Sbjct: 65  LSCVLYDALDCRLSSVLYDAIDCRLSSVLYDAIDCRLSCVLYDAIDCRLS 114



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 159 LLSVWHRVLGRECKALLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCGMS 13
           L SV +  +      +LY+ I C  S+VLYD  DC  +  L+  + C +S
Sbjct: 89  LSSVLYDAIDCRLSCVLYDAIDCRLSSVLYDAIDCRLSDVLYDAIDCRLS 138



 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 114 LLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCGMS 13
           +LY+ I C  S VLYD  DC  +  L++ + C +S
Sbjct: 8   VLYDAIDCRLSCVLYDAIDCRLSCVLYVAIDCRLS 42



 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -2

Query: 159 LLSVWHRVLGRECKALLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCGMS 13
           L  V +  +      +LY+ I C  S VLYD  DC  +  L++ + C +S
Sbjct: 137 LSGVLYDAIDCRLSGVLYDAIDCRLSWVLYDAIDCRLSCVLYVAIDCRLS 186



 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 159 LLSVWHRVLGRECKALLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCGMS 13
           L  V +  L     ++LY+ I C  S+VLYD  DC  +  L+  + C +S
Sbjct: 209 LSCVLYDALDCRLSSVLYDAIDCRLSSVLYDAIDCRLSDVLYDAIDCRLS 258



 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -2

Query: 159 LLSVWHRVLGRECKALLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCGMS 13
           L SV +  +      +LY+ I C  S VLYD  DC  +  L+  + C +S
Sbjct: 113 LSSVLYDAIDCRLSDVLYDAIDCRLSGVLYDAIDCRLSGVLYDAIDCRLS 162


>SB_28078| Best HMM Match : SGS (HMM E-Value=1.5)
          Length = 934

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 22/86 (25%), Positives = 36/86 (41%)
 Frame = +2

Query: 203 STRTSVQNNGHIFTYTQLSLRIGKIRAKHTHSAKNK*Q*YWNCRRLRNERF*KKNSPRTH 382
           S+++  +N+  I    +  +RI          A N+   YWN  R R+ R  + +SPR  
Sbjct: 70  SSQSHQENHNVITQLIEDGIRINNDSDSDDERAINRS--YWNSGR-RSPRHSRPSSPRCR 126

Query: 383 TTYPEVLNVLALTN*SQQPTAHRVPP 460
           T    +     +T+ S  P     PP
Sbjct: 127 TPRNNIFTTPMITSTSASPRGSMAPP 152


>SB_51910| Best HMM Match : ig (HMM E-Value=4.9e-05)
          Length = 562

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 409 DIEYLGVRSVRAWRILLLKPLIAQSSTIPI 320
           D+E LG R+   W  L+L P++ +   + I
Sbjct: 344 DLESLGARNATGWTDLMLNPIVEKDKEVRI 373


>SB_41963| Best HMM Match : Metallothio (HMM E-Value=3.7)
          Length = 167

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = -3

Query: 401 VPRGT*CACVENSSFKTSH---CAIFYNSNTIVICF*HCACVWLEFYRFVGTVVCK*IC- 234
           +  GT CA V  +     H   CAI + +   ++C+  CA V       V    C  +C 
Sbjct: 64  IVHGTKCAIVHGTKCAIVHGTKCAIVHGTQCAIVCWTKCAIVHGTKCAIVHGTKCAIVCW 123

Query: 233 VRCFVL 216
            +C ++
Sbjct: 124 TKCAIV 129


>SB_14757| Best HMM Match : DUF468 (HMM E-Value=6.5)
          Length = 198

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = +3

Query: 117 LYIHVPAHGARPI-TKH*IITYINSERNPHLHGHQYKTTDTYLLTHNCPY 263
           +++H P H      T+    TY + +   H+H  +Y    T    H C Y
Sbjct: 112 MHVHAPRHANTCTRTQTRKCTYTHPDTQIHVHAPRYGNARTRTQAHKCTY 161


>SB_36564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 422

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 172 LHTSILSVIPIYTDISTKQRTHIYLHTTV 258
           L TS  ++ P  TDI   Q +H Y H T+
Sbjct: 39  LRTSRYNIHPAITDIPLLQTSHYYRHPTI 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,506,703
Number of Sequences: 59808
Number of extensions: 354476
Number of successful extensions: 1011
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)