Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0437.Seq
         (568 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane hel...    36   0.13 
AK074528-1|BAC11041.1|  145|Homo sapiens protein ( Homo sapiens ...    31   2.8  
AK022609-1|BAB14128.1|  307|Homo sapiens protein ( Homo sapiens ...    31   3.7  
AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens ...    30   4.9  
AK123032-1|BAC85519.1|  274|Homo sapiens  factor.  protein.            30   6.5  
AK128416-1|BAC87430.1|  303|Homo sapiens protein ( Homo sapiens ...    29   8.6  
AK126537-1|BAC86582.1|  467|Homo sapiens protein ( Homo sapiens ...    29   8.6  
AK124073-1|BAC85767.1|  536|Homo sapiens protein ( Homo sapiens ...    29   8.6  

>AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 346

 Score = 35.5 bits (78), Expect = 0.13
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
 Frame = -3

Query: 383 CACVENSSFKTSHCAIFYNSNTIVICF*HCACVWLEFYRFVGTVVCK*ICVRCFVLMSV* 204
           C CV  S    S C   Y    + IC   C C+ +     +   V   +CV   V + V 
Sbjct: 5   CDCV--SCVSVSVCLYLYVC--VCICVSVCVCICVSVCVCICVCVSVFVCVCICVCVCVC 60

Query: 203 MGITLRIDVCNYLMFCYRSGTVCWDVNVKLY-----CTITFDVVALMFCM 69
           + + + I VC YL  C    +VC  V+V +Y     C   +  V++  C+
Sbjct: 61  VSMCVSISVCVYLCLCV-CVSVCVYVSVCMYLCVFLCVCVYVSVSVCLCV 109


>AK074528-1|BAC11041.1|  145|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90047 fis, clone HEMBA1002316. ).
          Length = 145

 Score = 31.1 bits (67), Expect = 2.8
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +2

Query: 437 PTAHRVPPQALRLQSHRRGPHHLPIVR 517
           P  HR P    RL +H R  HHLP VR
Sbjct: 87  PNLHRRPHSHPRLHTHTRPHHHLPRVR 113


>AK022609-1|BAB14128.1|  307|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12547 fis, clone NT2RM4000634. ).
          Length = 307

 Score = 30.7 bits (66), Expect = 3.7
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
 Frame = -3

Query: 383 CACVENSSFK-TSHCAIFYNSNTIVIC-F*H---CACVWLEFYRFVGTVVCK*ICVRCFV 219
           CACV   +F     C   +    + +C + H   CACVW+     V   VC  +CV   +
Sbjct: 182 CACVCGCTFVCVCLCVWVHICVCVCLCVWVHICVCACVWVHICVCVPVCVC--LCVWVHI 239

Query: 218 LMSV*MGITLRIDVCNYLMFCYRSGTVCWDVN 123
            + V + + + I VC     C  +G  C  +N
Sbjct: 240 CVCVCLCVWVHICVCVCACVCV-AGPGCQTLN 270



 Score = 29.9 bits (64), Expect = 6.5
 Identities = 19/76 (25%), Positives = 32/76 (42%)
 Frame = -3

Query: 383 CACVENSSFKTSHCAIFYNSNTIVICF*HCACVWLEFYRFVGTVVCK*ICVRCFVLMSV* 204
           CACV   +F    CA       + +C   C C ++     V   +C  +C+  +V + V 
Sbjct: 158 CACVWGCTF-VCVCACVCGCTFVCVCACVCGCTFVCVCLCVWVHICVCVCLCVWVHICVC 216

Query: 203 MGITLRIDVCNYLMFC 156
             + + I VC  +  C
Sbjct: 217 ACVWVHICVCVPVCVC 232


>AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45698 fis, clone FEBRA2017811. ).
          Length = 415

 Score = 30.3 bits (65), Expect = 4.9
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +3

Query: 63  HNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHLHGHQYKTTDTYL 242
           H H  H   Y   +  +  Y H   H    +  H    +IN+  + H+H H +  T T+ 
Sbjct: 254 HIHM-HIHTYTHMHTHMDTYPHTHIHTCTHMHSH---AHINTHTHAHIHMHMHTHTHTHT 309

Query: 243 LTH 251
            TH
Sbjct: 310 YTH 312


>AK123032-1|BAC85519.1|  274|Homo sapiens  factor.  protein.
          Length = 274

 Score = 29.9 bits (64), Expect = 6.5
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
 Frame = -3

Query: 290 CVWLEFYRFVGTVVCK*ICVRCFVLMSV*MG--ITLRIDVCNYLMFCYRSGTV---CWDV 126
           CV++  Y  +G   C  +CV  FV + V     I + I VC ++  C  S      C  V
Sbjct: 53  CVFVSVYTCMGVFECVHLCVHLFVCICVGASAWILVCICVCAHVCTCVHSFVYVCGCVHV 112

Query: 125 NVKLY-CTITFDVVALMFCM 69
            +++Y C      V+L  C+
Sbjct: 113 GMRVYLCEHVRMCVSLCACL 132


>AK128416-1|BAC87430.1|  303|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46559 fis, clone THYMU3040126. ).
          Length = 303

 Score = 29.5 bits (63), Expect = 8.6
 Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
 Frame = -3

Query: 383 CACVENSSFKTSHCAIFYNSNTIVICF*HCACVWLEFYRFVGTVVCK*ICVRCFVLMSV* 204
           C CV   ++  +H  +  +++  +  +    CV+   Y +    VC    +   V + V 
Sbjct: 108 CVCVCTHAYIHTHVCVCVHTHIYIHMY---VCVYTRIYTYTCVCVCTHAYIHTHVYVCVH 164

Query: 203 MGITLRIDVCNYL-MFCYRSGTVCWDVNVKLY 111
             I + + VC Y  ++ Y    VC   ++ ++
Sbjct: 165 THIYIHMCVCVYTRIYTYTCMCVCVHTHIYIH 196


>AK126537-1|BAC86582.1|  467|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44573 fis, clone UTERU3016789, moderately
           similar to SH3 domain-binding protein 3BP-2. ).
          Length = 467

 Score = 29.5 bits (63), Expect = 8.6
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -3

Query: 317 IVICF*HCACVWLEFYRFVGTVVCK*ICVRCFVLMSV*MGITLRIDVCNYLMFC 156
           + +C   CACV L  Y  V   VC  +C R  V M V + +T+   VC  +  C
Sbjct: 31  LCVCQSMCACVCLSAYPCVH--VC--VCQRIRVCMCVSVSLTMCACVCQCIRVC 80


>AK124073-1|BAC85767.1|  536|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42079 fis, clone SYNOV2021320, highly  similar
           to SH3 DOMAIN-BINDING PROTEIN 3BP-2. ).
          Length = 536

 Score = 29.5 bits (63), Expect = 8.6
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -3

Query: 317 IVICF*HCACVWLEFYRFVGTVVCK*ICVRCFVLMSV*MGITLRIDVCNYLMFC 156
           + +C   CACV L  Y  V   VC  +C R  V M V + +T+   VC  +  C
Sbjct: 31  LCVCQSMCACVCLSAYPCVH--VC--VCQRIRVCMCVSVSLTMCACVCQCIRVC 80


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,334,385
Number of Sequences: 237096
Number of extensions: 1460305
Number of successful extensions: 2903
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2852
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5759818212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)