Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0437.Seq
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical ...    28   4.1  
AB006659-1|BAA21847.1|  655|Caenorhabditis elegans E6-AP ubiquit...    28   4.1  
AL132898-8|CAB60959.1|  297|Caenorhabditis elegans Hypothetical ...    28   5.4  
AL032628-1|CAA21555.1|  218|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z72510-3|CAA96653.1|  366|Caenorhabditis elegans Hypothetical pr...    27   7.1  

>AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical
            protein Y39A1C.2 protein.
          Length = 1066

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +3

Query: 267  SVKFEPNTRTVLKTNDNSIGIVEDCA-MRGFKRRILHARTLRTPRYSM---SWHSLINHN 434
            +V   P+ RT+  TN+N I  V   A  R F+R     +   T   S+   +W SL   N
Sbjct: 857  TVDLVPSGRTISVTNENKIDYVHRMAHHRVFRRTQEQCKAFVTGMQSILQPTWLSLFAPN 916

Query: 435  SLQLIV 452
             LQ ++
Sbjct: 917  DLQCLI 922


>AB006659-1|BAA21847.1|  655|Caenorhabditis elegans E6-AP
           ubiquitin-protein ligase protein.
          Length = 655

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +3

Query: 267 SVKFEPNTRTVLKTNDNSIGIVEDCA-MRGFKRRILHARTLRTPRYSM---SWHSLINHN 434
           +V   P+ RT+  TN+N I  V   A  R F+R     +   T   S+   +W SL   N
Sbjct: 445 TVDLVPSGRTISVTNENKIDYVHRMAHHRVFRRTQEQCKAFVTGMQSILQPTWLSLFAPN 504

Query: 435 SLQLIV 452
            LQ ++
Sbjct: 505 DLQCLI 510


>AL132898-8|CAB60959.1|  297|Caenorhabditis elegans Hypothetical
           protein Y59A8B.11 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = -1

Query: 409 DIEYLGVRSVRAWRILLLKPLIAQSSTIPILLSFVFSTVRVFGSNF 272
           D  YL V      R +LLK  + +S  I     F    VRVF  NF
Sbjct: 221 DTAYLSVADAVKIRDILLKSTVFESGIITSRNIFSVGVVRVFNPNF 266


>AL032628-1|CAA21555.1|  218|Caenorhabditis elegans Hypothetical
           protein Y38H6A.1 protein.
          Length = 218

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -3

Query: 371 ENSSFKTSHCAIFYNSNTIVICF*HCACVWLEFYRFVGTVVCK*ICVRCFVLMS 210
           +N S K   CAI Y    + +    CA V  +F+RF+   +   I    ++L+S
Sbjct: 164 QNLSAKQYACAIKYAPQVVTVTGYKCATVIDKFFRFLSFFIFSQILFCDYILVS 217


>Z72510-3|CAA96653.1|  366|Caenorhabditis elegans Hypothetical
           protein F53B7.4 protein.
          Length = 366

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 129 RECKALLYNNIRCSSSNVLYDCDCYC 52
           +EC +  Y +IRC   ++ Y+C  YC
Sbjct: 128 KECSS--YESIRCPEYSLCYNCSKYC 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,020,452
Number of Sequences: 27780
Number of extensions: 262089
Number of successful extensions: 720
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)