Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0437.Seq
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   0.93 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.6  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   2.8  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   2.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   4.9  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    21   8.6  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 173 NYLMFCYRSGTVCWDVNVKLYCTITFDVVA 84
           +Y     R+G  CWD N +L    TF +VA
Sbjct: 311 DYFTQINRNGIACWDTNTELNPN-TFILVA 339


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 189 ERNPHLHGHQYKTTDTYLLTHNCPYE 266
           +R+ HL  H +    T +  H+ PY+
Sbjct: 139 QRHHHLQNHHHHLQSTAVQDHHRPYQ 164


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 51  YNNNHNHTKH*SYYIECYCTVKLYIHVPAH 140
           YNNN+N+ K   Y I     + + + VP +
Sbjct: 96  YNNNNNYNKKLYYNINYIEQIPVPVPVPIY 125


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 51  YNNNHNHTKH*SYYIECYCTVKLYIHVPAH 140
           YNNN+N+ K   Y I     + + + VP +
Sbjct: 334 YNNNNNYNKKLYYNINYIEQIPVPVPVPIY 363


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 51  YNNNHNHTKH 80
           YN+NHN  +H
Sbjct: 425 YNHNHNQARH 434


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 51  YNNNHNHTKH*SYYIECYCTVKLYIHVP 134
           YNNN+N+  +   Y       ++ I VP
Sbjct: 97  YNNNNNYNNYKKLYYNINYIEQIPIPVP 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,836
Number of Sequences: 438
Number of extensions: 3383
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)