Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0436.Seq
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...    28   1.3  
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    28   1.3  
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ...    26   4.1  
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo...    26   4.1  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   7.1  

>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +2

Query: 497 KFSHNFIINYVQLRLLWNLLHDDRLH 574
           KF+H   + ++  ++ +N+LH+ R+H
Sbjct: 187 KFNHTVPLTHMDYKMAYNILHEYRIH 212


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 118 FYWFLNSNYISQ*SPWLSYQLWVIAYTESLVLNPIW 225
           F WF N + IS    W+   +  + + ++++LN +W
Sbjct: 408 FNWFCNLSTISGFLAWICVLVAYLQFRKAMILNNLW 443


>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +2

Query: 32  MHEIAVVFSNLMKRLGYKKYYVQGGDWGAFIG----SSIATIFPNEVLG 166
           ++EIA     +MKRL YK  +V    W + +G     S AT F  E LG
Sbjct: 242 VYEIAATSQAVMKRLNYKNKFVNA--WQSKVGPLPWMSPATDFVIEQLG 288


>SPCC594.04c |||steroid oxidoreductase superfamily
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 112 GCFYWFLNSNYISQ*SPWLSYQLWVIAYTESLV 210
           G F W  + N++++   WLS+ L+    +ESL+
Sbjct: 243 GLFRWSRHPNFLAEQLIWLSFYLFGAIASESLL 275


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 415 IAHMIREILVNILFNFMSYL 356
           + H+++E+ V+ L NFM YL
Sbjct: 756 VEHVVQELPVSYLANFMGYL 775


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,046
Number of Sequences: 5004
Number of extensions: 64187
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)