Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0436.Seq
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0612 - 18950025-18950192,18950501-18950637,18951202-189513...    30   1.4  
01_03_0315 + 14947450-14948284,14948439-14948540,14948656-149488...    30   1.8  
02_05_0965 + 33136373-33136512,33136595-33136688,33136845-331368...    29   3.2  
04_03_0972 + 21347212-21347284,21347966-21348009,21348153-213482...    28   5.6  
06_03_0875 - 25584789-25585307,25585424-25585570,25585734-255858...    28   7.4  
09_01_0154 + 2298432-2299415                                           27   9.7  

>09_04_0612 -
           18950025-18950192,18950501-18950637,18951202-18951350,
           18951738-18951968,18952654-18952724
          Length = 251

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 435 FLYYYKILDSTSPFYLLPSHLNLAIILSLTMFNYV--SCGTCFMMTVFTGK 581
           FL  Y + D   PF  LP HL + I + L    +V  SC +    ++F G+
Sbjct: 20  FLILYLMTDRNGPFGRLPEHLLVEIFIRLPTCEWVQISCVSKHWASIFQGE 70


>01_03_0315 +
           14947450-14948284,14948439-14948540,14948656-14948840,
           14949444-14949654,14949816-14949999,14950108-14950258,
           14950371-14950679
          Length = 658

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 53  FSNLMKRLGYKKYYVQGGDWGAFIGSSIATIFPNEVLGYHTNFGLSLTQK 202
           + + +  LGY  +  + G W   IG+SI    P E L  + N  L   Q+
Sbjct: 547 YGDFLNLLGYAWHMWEEGRWLDIIGASIPQTIPTEGLRKYINIALMCVQE 596


>02_05_0965 +
           33136373-33136512,33136595-33136688,33136845-33136889,
           33137007-33137174,33137247-33137331,33137531-33137637,
           33137918-33137998,33138232-33138284,33138361-33138460,
           33138911-33139054,33139268-33139364,33139528-33139611,
           33139904-33140123,33140204-33140297,33140406-33140975,
           33141348-33141449,33141564-33141656,33141834-33141836
          Length = 759

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 462 STSPFYLLPSHLNLAIILSLTMFNYVSC 545
           +  PFYLL S ++L I+  L++   VSC
Sbjct: 503 TNKPFYLLVSAISLMIVSCLSLMGIVSC 530


>04_03_0972 +
           21347212-21347284,21347966-21348009,21348153-21348237,
           21348810-21349358,21350291-21350416,21350772-21350936,
           21351243-21351310,21351529-21351618,21351740-21351830,
           21352214-21352812
          Length = 629

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 259 LVDRVDPLSGHIRDAIITEFGYMY 330
           L +R+DPLSG +  A+  E GY Y
Sbjct: 544 LYERLDPLSGGLARAVAGEEGYYY 567


>06_03_0875 -
           25584789-25585307,25585424-25585570,25585734-25585897,
           25586015-25586172,25586536-25586904,25586998-25587209,
           25587439-25588059,25588561-25588699,25588968-25589044,
           25589120-25589800,25590641-25590889
          Length = 1111

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 196 TESLVLNPIWFSISIASSRSALVDRVDPLSGHIRDAIITEFGYMYI 333
           T+SL +N    ++  AS +S+L+      S ++ D      GYM+I
Sbjct: 467 TQSLKINATGLTVMQASGKSSLIKGTAIGSSYLSDLTTLAVGYMFI 512


>09_01_0154 + 2298432-2299415
          Length = 327

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 429 LLFLYYYKILDSTSPFYLLPSHLNLAIILSLTMFNY 536
           LLF +Y  +L     F+LLP  L L    + T+F Y
Sbjct: 267 LLFTFYVWLLGVVFGFFLLPVALQLLSTTAATVFYY 302


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,800,873
Number of Sequences: 37544
Number of extensions: 369274
Number of successful extensions: 749
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)