Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0436.Seq
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24621| Best HMM Match : DUF164 (HMM E-Value=0.39)                   31   0.81 
SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_44270| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_40572| Best HMM Match : Ank (HMM E-Value=0.0017)                    28   7.5  

>SB_24621| Best HMM Match : DUF164 (HMM E-Value=0.39)
          Length = 566

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = +2

Query: 128 SSIATIFPNEVLGYHTNFGLSLTQKALSLT 217
           SS +T + N  L +HT   LSLT+K LSLT
Sbjct: 18  SSFSTRWTNSTLVHHTKKPLSLTKKLLSLT 47


>SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1758

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 3/34 (8%)
 Frame = +3

Query: 492  HLNLAIILSLTMFNYVSCGTCFM---MTVFTGKY 584
            +LN+ + +++ +FN +S   C++   +TVFTGKY
Sbjct: 1428 NLNIFLNIAVNIFNNISAPLCYIFISVTVFTGKY 1461


>SB_44270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1172

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 53  FSNLMKRLGYKKYYVQGGDWGAFIGSSIATIFPNEVLGYH 172
           F NL    GY   + Q  +WG   G+ I T F  +  G H
Sbjct: 155 FPNLPTWRGYGSAFTQPENWGENFGTRIRTYFVPQQSGSH 194


>SB_40572| Best HMM Match : Ank (HMM E-Value=0.0017)
          Length = 205

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 181 KVGMIAKDFIGKYSCY*GTNKSTPVASLNIVFL 83
           K+  + +DF+GK SC  GT +     +L ++++
Sbjct: 10  KIAQMVQDFLGKLSCEEGTAELRDALNLTLLYM 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,704,507
Number of Sequences: 59808
Number of extensions: 434247
Number of successful extensions: 936
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)