BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0436.Seq (648 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U64852-7|AAB04970.1| 452|Caenorhabditis elegans Hypothetical pr... 62 4e-10 Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr... 29 2.8 Z81015-3|CAB02656.1| 266|Caenorhabditis elegans Hypothetical pr... 28 5.0 Z69634-10|CAA93457.2| 431|Caenorhabditis elegans Hypothetical p... 27 8.7 Z68507-8|CAA92831.2| 431|Caenorhabditis elegans Hypothetical pr... 27 8.7 >U64852-7|AAB04970.1| 452|Caenorhabditis elegans Hypothetical protein W01A11.1 protein. Length = 452 Score = 61.7 bits (143), Expect = 4e-10 Identities = 27/59 (45%), Positives = 34/59 (57%) Frame = +2 Query: 2 SDAAVRPGLGMHEIAVVFSNLMKRLGYKKYYVQGGDWGAFIGSSIATIFPNEVLGYHTN 178 SD + G A VF LM RLGY K+Y+QGGDWGA I S + ++P V+ H N Sbjct: 192 SDQPKKTGFSQLACARVFRKLMLRLGYNKFYLQGGDWGAIITSLLTKVYPQNVMALHLN 250 Score = 34.3 bits (75), Expect = 0.076 Identities = 14/23 (60%), Positives = 18/23 (78%) Frame = +1 Query: 304 IITEFGYMYIQATKPDTLGKT*N 372 +I E GYM++QATKPDT G + N Sbjct: 294 LIVETGYMHLQATKPDTAGTSLN 316 >Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein F55H12.3 protein. Length = 2972 Score = 29.1 bits (62), Expect = 2.8 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = +1 Query: 181 WVIAYTESLVLNPIWFSISIASSRSALVDRVDPLSGHI 294 W+ TE L+ NPI + + ++ AL + DP G++ Sbjct: 782 WICYNTEGLMTNPINNACMLPEAQDALFVKQDPTDGYV 819 >Z81015-3|CAB02656.1| 266|Caenorhabditis elegans Hypothetical protein C11E4.4 protein. Length = 266 Score = 28.3 bits (60), Expect = 5.0 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +2 Query: 101 GGDWGAFIGSSIATIFPNEVLGYHTNF 181 GG +G F+G SI T+ + G+H+ F Sbjct: 85 GGQFGFFLGLSIITLIQMVLYGFHSAF 111 >Z69634-10|CAA93457.2| 431|Caenorhabditis elegans Hypothetical protein M18.8 protein. Length = 431 Score = 27.5 bits (58), Expect = 8.7 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = +3 Query: 489 SHLNLAIILSLTMFNYVSCGTCFMMTVFTGKYIPRRLR 602 S++ L L+ ++NY++ G F + F Y+PR R Sbjct: 58 SYMGLFNTLTFLLWNYLTIGNLFNASFFGPGYVPRGWR 95 >Z68507-8|CAA92831.2| 431|Caenorhabditis elegans Hypothetical protein M18.8 protein. Length = 431 Score = 27.5 bits (58), Expect = 8.7 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = +3 Query: 489 SHLNLAIILSLTMFNYVSCGTCFMMTVFTGKYIPRRLR 602 S++ L L+ ++NY++ G F + F Y+PR R Sbjct: 58 SYMGLFNTLTFLLWNYLTIGNLFNASFFGPGYVPRGWR 95 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,605,787 Number of Sequences: 27780 Number of extensions: 342780 Number of successful extensions: 792 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 762 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 792 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1434198608 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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