Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0436.Seq
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical pr...    62   4e-10
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81015-3|CAB02656.1|  266|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z69634-10|CAA93457.2|  431|Caenorhabditis elegans Hypothetical p...    27   8.7  
Z68507-8|CAA92831.2|  431|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical
           protein W01A11.1 protein.
          Length = 452

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 27/59 (45%), Positives = 34/59 (57%)
 Frame = +2

Query: 2   SDAAVRPGLGMHEIAVVFSNLMKRLGYKKYYVQGGDWGAFIGSSIATIFPNEVLGYHTN 178
           SD   + G      A VF  LM RLGY K+Y+QGGDWGA I S +  ++P  V+  H N
Sbjct: 192 SDQPKKTGFSQLACARVFRKLMLRLGYNKFYLQGGDWGAIITSLLTKVYPQNVMALHLN 250



 Score = 34.3 bits (75), Expect = 0.076
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +1

Query: 304 IITEFGYMYIQATKPDTLGKT*N 372
           +I E GYM++QATKPDT G + N
Sbjct: 294 LIVETGYMHLQATKPDTAGTSLN 316


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical
           protein F55H12.3 protein.
          Length = 2972

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 181 WVIAYTESLVLNPIWFSISIASSRSALVDRVDPLSGHI 294
           W+   TE L+ NPI  +  +  ++ AL  + DP  G++
Sbjct: 782 WICYNTEGLMTNPINNACMLPEAQDALFVKQDPTDGYV 819


>Z81015-3|CAB02656.1|  266|Caenorhabditis elegans Hypothetical
           protein C11E4.4 protein.
          Length = 266

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 101 GGDWGAFIGSSIATIFPNEVLGYHTNF 181
           GG +G F+G SI T+    + G+H+ F
Sbjct: 85  GGQFGFFLGLSIITLIQMVLYGFHSAF 111


>Z69634-10|CAA93457.2|  431|Caenorhabditis elegans Hypothetical
           protein M18.8 protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 489 SHLNLAIILSLTMFNYVSCGTCFMMTVFTGKYIPRRLR 602
           S++ L   L+  ++NY++ G  F  + F   Y+PR  R
Sbjct: 58  SYMGLFNTLTFLLWNYLTIGNLFNASFFGPGYVPRGWR 95


>Z68507-8|CAA92831.2|  431|Caenorhabditis elegans Hypothetical
           protein M18.8 protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 489 SHLNLAIILSLTMFNYVSCGTCFMMTVFTGKYIPRRLR 602
           S++ L   L+  ++NY++ G  F  + F   Y+PR  R
Sbjct: 58  SYMGLFNTLTFLLWNYLTIGNLFNASFFGPGYVPRGWR 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,605,787
Number of Sequences: 27780
Number of extensions: 342780
Number of successful extensions: 792
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)