Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0436.Seq
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    51   1e-08

>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 50.8 bits (116), Expect = 1e-08
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +2

Query: 98  QGGDWGAFIGSSIATIFPNEVLGYHTNFGLSLTQKALSLTLFGSLFPSPV-VDQHW 262
           QGGDWG+ I S +A +FP +++G H N   SL    L     G+ FPS +  ++H+
Sbjct: 1   QGGDWGSVIASDMAVLFPEKIIGLHNNMCTSLNLSNLFWLFVGTYFPSLIGANEHY 56



 Score = 30.3 bits (65), Expect = 0.017
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +1

Query: 277 PLSGHIRDAIITEFGYMYIQATKPDT 354
           P+S  I   +I E GY +IQATKPDT
Sbjct: 61  PVS-EILSFLIEESGYFHIQATKPDT 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,063
Number of Sequences: 438
Number of extensions: 4598
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)