Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0436.Seq
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g21950.1 68418.m02549 hydrolase, alpha/beta fold family prote...    31   0.87 
At5g09430.1 68418.m01092 hydrolase, alpha/beta fold family prote...    28   6.1  

>At5g21950.1 68418.m02549 hydrolase, alpha/beta fold family protein
           low similarity to
           2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase
           [Pseudomonas fluorescens] GI:1871461, hydrolase EtbD2
           [Rhodococcus sp.] GI:3273241; contains Pfam profile
           PF00561: hydrolase, alpha/beta fold family
          Length = 300

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +2

Query: 44  AVVFSNLMKRLGYKKYYVQGGDWGAFIGSSIATIFPNEV 160
           A+    LM++L  +++ V G  +G F+  ++A +FP +V
Sbjct: 108 ALCMGKLMEKLEVERFSVVGTSYGGFVAYNMAKMFPEKV 146


>At5g09430.1 68418.m01092 hydrolase, alpha/beta fold family protein
           low similarity to hydrolases from Rhodococcus sp. EtbD1
           GI:3273239, EtbD2 GI:3273241; contains Pfam profile
           PF00561: hydrolase, alpha/beta fold family
          Length = 303

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 62  LMKRLGYKKYYVQGGDWGAFIGSSIATIFPNEV 160
           LM+  G ++  + G  +G F+G S+A  FP  V
Sbjct: 120 LMEAHGVQRMNIVGISYGGFVGYSLAAQFPENV 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,718,893
Number of Sequences: 28952
Number of extensions: 316915
Number of successful extensions: 643
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)