Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0434.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1640 + 38836977-38836988,38837694-38838047,38838164-388382...    30   1.6  
11_03_0025 + 9047646-9047958,9048150-9048474,9049833-9051828,905...    29   2.8  

>01_06_1640 +
           38836977-38836988,38837694-38838047,38838164-38838294,
           38838554-38838860,38839036-38839349,38839507-38839645
          Length = 418

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 159 WLSIIIHQRMFEQLLYCHLIICRHY 233
           W  + +H RM   L  CH+ +CRH+
Sbjct: 351 WQLLELHSRMCSALETCHVPLCRHF 375


>11_03_0025 +
           9047646-9047958,9048150-9048474,9049833-9051828,
           9051991-9052190,9052851-9052899
          Length = 960

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +2

Query: 422 CVFNVFVDLEVKGFFCFLFRWVDELTA--HLC 511
           C    F +L++K + C++ RW+  L++  HLC
Sbjct: 691 CSLPKFHELDIKNYLCWVPRWITMLSSLVHLC 722


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,328,012
Number of Sequences: 37544
Number of extensions: 260857
Number of successful extensions: 415
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)