Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0434.Seq
         (598 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC117325-1|AAI17326.1| 1221|Homo sapiens dermatan sulfate epimer...    30   5.4  
AK021539-1|BAB13840.1|  755|Homo sapiens protein ( Homo sapiens ...    30   5.4  
AF480435-1|AAN32895.1| 1222|Homo sapiens NCAG1 protein.                30   5.4  
L40395-1|AAC42002.1|  346|Homo sapiens protein ( Homo sapiens (c...    29   9.5  
BC011750-1|AAH11750.1|  351|Homo sapiens eukaryotic translation ...    29   9.5  
BC003165-1|AAH03165.1|  351|Homo sapiens eukaryotic translation ...    29   9.5  
BC000494-1|AAH00494.1|  351|Homo sapiens eukaryotic translation ...    29   9.5  
AF035280-1|AAB88176.1|  351|Homo sapiens protein ( Homo sapiens ...    29   9.5  
AC006530-5|AAD30183.1|  351|Homo sapiens EIF-2B protein.               29   9.5  

>BC117325-1|AAI17326.1| 1221|Homo sapiens dermatan sulfate
           epimerase-like protein.
          Length = 1221

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 357 LQLQILKYDFNVYSEY*GWKMIVFLTFLLI*R*KAFFVSYLDGW-TSSQPTCVKW 518
           + L IL + +  Y  +   K++ ++  L+I     +F+  LD W T SQP C KW
Sbjct: 791 ISLVILTFQWRFYLSF--RKLMRWILILVI---ALWFIELLDVWSTCSQPICAKW 840


>AK021539-1|BAB13840.1|  755|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11477 fis, clone HEMBA1001746, weakly similar to
           Homo sapiens squamous cell carcinoma antigen recognized
           by T ).
          Length = 755

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 357 LQLQILKYDFNVYSEY*GWKMIVFLTFLLI*R*KAFFVSYLDGW-TSSQPTCVKW 518
           + L IL + +  Y  +   K++ ++  L+I     +F+  LD W T SQP C KW
Sbjct: 576 ISLVILTFQWRFYLSF--RKLMRWILILVI---ALWFIELLDVWSTCSQPICAKW 625


>AF480435-1|AAN32895.1| 1222|Homo sapiens NCAG1 protein.
          Length = 1222

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 357 LQLQILKYDFNVYSEY*GWKMIVFLTFLLI*R*KAFFVSYLDGW-TSSQPTCVKW 518
           + L IL + +  Y  +   K++ ++  L+I     +F+  LD W T SQP C KW
Sbjct: 792 ISLVILTFQWRFYLSF--RKLMRWILILVI---ALWFIELLDVWSTCSQPICAKW 841


>L40395-1|AAC42002.1|  346|Homo sapiens protein ( Homo sapiens
           (clone S20iii15) mRNA, 3' end of cds. ).
          Length = 346

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 275 IDTAAIDHTHTSEIIMSTNYQMTIEQLFKHS 183
           I   A++H H++E+IM+  +  T+E   K +
Sbjct: 145 IAAQALEHIHSNEVIMTIGFSRTVEAFLKEA 175


>BC011750-1|AAH11750.1|  351|Homo sapiens eukaryotic translation
           initiation factor 2B, subunit 2 beta, 39kDa protein.
          Length = 351

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 275 IDTAAIDHTHTSEIIMSTNYQMTIEQLFKHS 183
           I   A++H H++E+IM+  +  T+E   K +
Sbjct: 151 IAAQALEHIHSNEVIMTIGFSRTVEAFLKEA 181


>BC003165-1|AAH03165.1|  351|Homo sapiens eukaryotic translation
           initiation factor 2B, subunit 2 beta, 39kDa protein.
          Length = 351

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 275 IDTAAIDHTHTSEIIMSTNYQMTIEQLFKHS 183
           I   A++H H++E+IM+  +  T+E   K +
Sbjct: 151 IAAQALEHIHSNEVIMTIGFSRTVEAFLKEA 181


>BC000494-1|AAH00494.1|  351|Homo sapiens eukaryotic translation
           initiation factor 2B, subunit 2 beta, 39kDa protein.
          Length = 351

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 275 IDTAAIDHTHTSEIIMSTNYQMTIEQLFKHS 183
           I   A++H H++E+IM+  +  T+E   K +
Sbjct: 151 IAAQALEHIHSNEVIMTIGFSRTVEAFLKEA 181


>AF035280-1|AAB88176.1|  351|Homo sapiens protein ( Homo sapiens
           clone 23689 mRNA, complete cds. ).
          Length = 351

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 275 IDTAAIDHTHTSEIIMSTNYQMTIEQLFKHS 183
           I   A++H H++E+IM+  +  T+E   K +
Sbjct: 151 IAAQALEHIHSNEVIMTIGFSRTVEAFLKEA 181


>AC006530-5|AAD30183.1|  351|Homo sapiens EIF-2B protein.
          Length = 351

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 275 IDTAAIDHTHTSEIIMSTNYQMTIEQLFKHS 183
           I   A++H H++E+IM+  +  T+E   K +
Sbjct: 151 IAAQALEHIHSNEVIMTIGFSRTVEAFLKEA 181


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,260,418
Number of Sequences: 237096
Number of extensions: 1545655
Number of successful extensions: 5693
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5693
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)