Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0433.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    27   2.0  
SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    27   2.6  
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po...    26   6.0  

>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 392 LQCSDFLYLLCQIVVANMKHVSNLFIALPQLIKLEN*LVYFHEFASIV 535
           LQ SD + L+C+I++A +  V     +LP +  ++     F EF + V
Sbjct: 720 LQYSDVVGLICKIMIAGLNEVEPSPFSLPIVTTIQYFCDRFTEFPAAV 767


>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +2

Query: 356 KNTKNIIRILFELQCSDFLYLLCQIVVANMKHVSNLFIALP 478
           KNT   ++  F+L+CS +LY L   VVA+ K    L  +LP
Sbjct: 27  KNTNKDVK--FKLRCSKYLYTL---VVADAKKAEKLRQSLP 62


>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -1

Query: 179 ILLKAIYFVILKFLKYKGQGTILNVFKDHKENLYFLDKMCAVYCPFFVI 33
           +++  +Y+ I K    K   TIL+      E  Y  D  C  + P FV+
Sbjct: 100 VIMATMYYFIAKRFLMKSNDTILSSTDYQLEWNYCFDVHCNSFFPSFVL 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,262
Number of Sequences: 5004
Number of extensions: 51739
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)