Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0431.Seq
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    30   0.15 
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   3.3  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    25   3.3  
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    25   3.3  
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    25   5.8  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    25   5.8  

>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 29.9 bits (64), Expect = 0.15
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 294  TRKKQG*YQQKVES*NALLGDSQVEVAGRCHYQGESKKIHADS 166
            T +K     +K+ES N+ L D   E+A      G  +K+H++S
Sbjct: 1451 TSRKNSSLMEKIESINSSLDDKSFELASAVEKLGALQKLHSES 1493


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 18/67 (26%), Positives = 27/67 (40%)
 Frame = -2

Query: 245 PFWATVKWRSQAAVTTRVNPKRSMPIPRSISELVNTRSTL*VPLPVLLRASSNATDPSSA 66
           P   T   R   A TT+       P P + S +  T   + VP+     + S A  PS +
Sbjct: 248 PSTVTSTQRKNTATTTKTTTYVG-PSPSASSVVAYTTKCIVVPVITTAASQSEAATPSPS 306

Query: 65  AELSDIF 45
           A +  +F
Sbjct: 307 AAVYPLF 313


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 267 VGIILASYVWGYVSDTKGRRFTLVIPLLIS 356
           +G+++ + VW   +DT GRR+   +  L +
Sbjct: 129 LGLLVGAMVWSLSADTIGRRWAFNLTFLFT 158


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -2

Query: 215 QAAVTTRVNP-KRSMPIPRSISELVNTRSTL*VPLPVLLRASSNATDPSSAAELSDIFTN 39
           +A+  +++ P K S P+P S S ++  RS   + L V      N+T PS   +  DI   
Sbjct: 75  KASSGSKIYPFKNSFPLPFSRS-ILPIRSLAFLKLCV----RHNSTVPSKDEQAQDISKI 129

Query: 38  NFNGTRDT 15
           N NGT  T
Sbjct: 130 NTNGTLQT 137


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 258 LPFVGIILASYVWGYVSDTKGRR---FTLVIPLLISFAL 365
           + +VG I+    +G+ SD  GR+    T  I L++S AL
Sbjct: 123 IAYVGTIVGQLSFGWYSDRFGRKNGMITATIILIVSTAL 161


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -2

Query: 203 TTRVNPKRSMPIPRSISELVNTRSTL*VP-LPVLLRASSNATDPSSAAELSDIFTNNFNG 27
           ++  +  RS  + RS   +   R+TL  P  P  L  ++N+T  +S+ + +  FT+ F  
Sbjct: 4   SSNTSSHRSYGLRRSQRSMNLNRATLLAPPTPSSLYDANNSTSSTSSQKPNTSFTSLFGP 63

Query: 26  TRDTS 12
            + T+
Sbjct: 64  RKQTT 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,602,628
Number of Sequences: 5004
Number of extensions: 30063
Number of successful extensions: 64
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)