Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0431.Seq
(402 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557... 36 0.016
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875... 35 0.021
09_06_0267 + 21938300-21938371,21938963-21939235,21940665-219412... 34 0.037
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 33 0.085
01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920... 32 0.20
12_01_0209 - 1583401-1583498,1583879-1583922,1584285-1584373,158... 29 1.0
11_01_0208 - 1628020-1628117,1628282-1628325,1628790-1628878,162... 29 1.0
01_01_1224 - 9888726-9888820,9889042-9889085,9889194-9889282,988... 29 1.4
12_01_0210 - 1593732-1593823,1594730-1594773,1594895-1594983,159... 28 3.2
08_02_0307 - 15612761-15612856,15613879-15613950,15614325-15615290 27 4.2
04_04_0345 - 24542869-24543540,24543725-24543805,24543845-245439... 27 5.6
11_01_0209 - 1642473-1642579,1642783-1642826,1642935-1643023,164... 27 7.3
07_03_0917 - 22574472-22574558,22574756-22574821,22574848-225748... 27 7.3
05_05_0059 + 22011168-22011662,22012668-22012894,22013029-220133... 27 7.3
03_05_0378 - 23619169-23619225,23619389-23619454,23620052-236202... 27 7.3
02_01_0377 + 2728892-2729187,2729483-2729544,2730516-2730570,273... 27 7.3
11_01_0207 - 1620192-1620280,1620408-1620451,1620703-1620791,162... 26 9.7
10_08_0058 + 14521922-14522779 26 9.7
07_01_0448 - 3383706-3384761 26 9.7
05_07_0183 + 28251548-28252009,28252172-28252594 26 9.7
05_03_0227 + 10655204-10655269,10656333-10656393,10656570-106566... 26 9.7
03_01_0256 - 1992298-1993878 26 9.7
02_05_0628 - 30466535-30468001 26 9.7
>03_05_0434 +
24252994-24253449,24254791-24254877,24255450-24255748,
24256146-24256383,24256907-24257441,24257527-24257729,
24258311-24258520
Length = 675
Score = 35.5 bits (78), Expect = 0.016
Identities = 14/48 (29%), Positives = 29/48 (60%)
Frame = +3
Query: 252 NSLPFVGIILASYVWGYVSDTKGRRFTLVIPLLISFALNCISSLANHW 395
+S+ F G+++ + WG+VSD GRR L+ L + + +S+ + ++
Sbjct: 257 SSVVFAGMLIGASGWGFVSDKYGRRICLLFSTLFASGMGFLSAFSPNY 304
>04_04_1099 -
30886361-30886591,30886739-30886941,30887030-30887555,
30887751-30887988,30888592-30888695,30888784-30889059,
30889216-30889218
Length = 526
Score = 35.1 bits (77), Expect = 0.021
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 255 SLPFVGIILASYVWGYVSDTKGRR 326
S+ FVG+++ +Y WG VSD GRR
Sbjct: 69 SIVFVGMLIGAYTWGVVSDNYGRR 92
>09_06_0267 +
21938300-21938371,21938963-21939235,21940665-21941202,
21941288-21941490,21941603-21941827
Length = 436
Score = 34.3 bits (75), Expect = 0.037
Identities = 21/49 (42%), Positives = 29/49 (59%)
Frame = +3
Query: 255 SLPFVGIILASYVWGYVSDTKGRRFTLVIPLLISFALNCISSLANHWLV 401
S+ FVG+++ +Y WG VSD GRR V+P L L SSL + L+
Sbjct: 91 SVVFVGMLVGAYSWGIVSDNYGRR-QAVMPSLGWRWLLAFSSLPSFALL 138
>03_02_0234 +
6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 33.1 bits (72), Expect = 0.085
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Frame = -1
Query: 234 DSQVEVAGRCHYQG---ESKKIHADSQEYQRAGQHQEHVVSAVTSFVK-----SFFEC 85
D E+ RCHY + + H D Y +AG +E+ + +T F + S+F C
Sbjct: 267 DEDEEMKARCHYLAANVDDEIYHLDDDVYVKAGPDEENYIGRITEFFEGVDRGSYFSC 324
>01_01_1157 -
9203448-9203560,9204725-9204768,9205345-9205433,
9205565-9205609,9205805-9205912,9206003-9206088,
9206492-9206579,9206725-9206910,9207181-9207256,
9207332-9207381,9207715-9207777,9207882-9207962,
9208028-9208130,9208246-9208348,9208489-9208549,
9209059-9209154,9209185-9209225,9209848-9209922,
9210412-9210562
Length = 552
Score = 31.9 bits (69), Expect = 0.20
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 270 GIILASYVWGYVSDTKGRRFTLVIPLLISFALNCISSL-ANHWL 398
G L+S +WG V+D GR+ ++I L+ N + L +++W+
Sbjct: 148 GRALSSVIWGIVADKYGRKPIIIITLISIIIFNTLFGLSSSYWM 191
>12_01_0209 -
1583401-1583498,1583879-1583922,1584285-1584373,
1584911-1585018,1585158-1585243,1585385-1585472,
1585970-1586140,1586379-1586454,1586534-1586583,
1586692-1586754,1586839-1586892,1587038-1587140,
1587265-1587367,1587479-1587569,1587629-1587669,
1587801-1587879
Length = 447
Score = 29.5 bits (63), Expect = 1.0
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 267 VGIILASYVWGYVSDTKGRRFTLVIPLLISFALNCISSLA-NHWL 398
+G AS +WG V+D GR+ ++ + LN + L+ +W+
Sbjct: 76 IGRGFASILWGMVADRIGRKPVIIFSIFAVIVLNTLFGLSVKYWM 120
>11_01_0208 -
1628020-1628117,1628282-1628325,1628790-1628878,
1628986-1629030,1629397-1629504,1629650-1629735,
1629870-1629957,1630275-1630445,1630718-1630793,
1630877-1630926,1631035-1631097,1631201-1631254,
1631398-1631500,1631626-1631728,1632038-1632098,
1632186-1632226,1632375-1632453
Length = 452
Score = 29.5 bits (63), Expect = 1.0
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 267 VGIILASYVWGYVSDTKGRRFTLVIPLLISFALNCISSLA-NHWL 398
+G AS +WG V+D GR+ ++ + LN + L+ +W+
Sbjct: 66 IGRGFASILWGMVADRIGRKPVIIFSIFAVIVLNTLFGLSVKYWM 110
>01_01_1224 -
9888726-9888820,9889042-9889085,9889194-9889282,
9889390-9889434,9889849-9889956,9890042-9890127,
9890324-9890411,9890669-9890872,9891251-9891326,
9891429-9891478,9891753-9891815,9891942-9891995,
9892079-9892181,9892266-9892368,9892563-9892623,
9892746-9892786,9893183-9893348
Length = 491
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 264 FVGIILASYVWGYVSDTKGRRFTLVIPLLISFALNCISSLA-NHWL 398
F+G +++ WG +D GR+ +VI +L N + L+ +W+
Sbjct: 94 FLGRTISAVPWGIFADKYGRKPCIVISILSVIVFNTLFGLSTTYWM 139
>12_01_0210 -
1593732-1593823,1594730-1594773,1594895-1594983,
1595076-1595120,1595457-1595564,1595647-1595732,
1595872-1595959,1596159-1596335,1596531-1596606,
1596709-1596758,1596834-1596896,1597152-1597254,
1597337-1597439,1597559-1597619,1598119-1598159,
1599790-1599961
Length = 465
Score = 27.9 bits (59), Expect = 3.2
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 267 VGIILASYVWGYVSDTKGRRFTLVIPLLISFALNCISSLA-NHWL 398
VG A+ WG V+D GR+ +V +L N + L+ +W+
Sbjct: 97 VGRSFAAIFWGVVADRIGRKPVIVFSILSVVIFNTLFGLSTKYWM 141
>08_02_0307 - 15612761-15612856,15613879-15613950,15614325-15615290
Length = 377
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 49 MSESSAADDGSVAFEEALNKTGNG 120
+SES+A DG VA E++ ++ G+G
Sbjct: 347 VSESTACKDGDVACEKSFSQAGHG 370
>04_04_0345 -
24542869-24543540,24543725-24543805,24543845-24543910,
24543991-24544098,24545101-24545436,24545516-24545586,
24546105-24546252
Length = 493
Score = 27.1 bits (57), Expect = 5.6
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 255 SLPFVGIILASYVWGYVSDTKGRR-FTLVIPLLISFALNCI 374
S+ VG I+ + G+++DT GRR TLV +L FAL +
Sbjct: 78 SMALVGAIIGAAGGGWINDTYGRRKSTLVADML--FALGSL 116
>11_01_0209 -
1642473-1642579,1642783-1642826,1642935-1643023,
1643114-1643158,1643484-1643591,1643691-1643776,
1643917-1644004,1644211-1644387,1644720-1644795,
1644898-1644947,1645030-1645092,1645332-1645434,
1645513-1645615,1645731-1645791,1646268-1646308,
1646792-1646825
Length = 424
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 267 VGIILASYVWGYVSDTKGRRFTLVIPLLISFALNCISSLA-NHWL 398
VG A+ WG V+D GR+ ++ +L N + L+ +W+
Sbjct: 51 VGRSFAAIFWGVVADRIGRKPVIMFSILSVVIFNTLFGLSTKYWM 95
>07_03_0917 -
22574472-22574558,22574756-22574821,22574848-22574886,
22574978-22575026,22575492-22575559,22575650-22575695,
22575773-22575866,22575956-22576018,22576436-22576558,
22577143-22577176,22577489-22577551,22577678-22577785,
22577914-22577976,22578322-22578378
Length = 319
Score = 26.6 bits (56), Expect = 7.3
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = +3
Query: 207 SGLRPPLDCRPKGHSNSLPFVGIILASYVWGYVSDTKGRRFTLVIPLLISFALNCISSLA 386
S + PP+ K + LP + +I + + G ++ I + F L C+ SL
Sbjct: 226 SAVAPPVVFEGKSLAGILPAIDLISKNALVGMPTEKTLSDLVGQIFYFVGFGLFCVESLL 285
Query: 387 NHWLV 401
+ W++
Sbjct: 286 SIWVI 290
>05_05_0059 +
22011168-22011662,22012668-22012894,22013029-22013377,
22013464-22013508,22013589-22013735,22013851-22013988,
22014126-22014159,22014258-22014430
Length = 535
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +3
Query: 255 SLPFVGIILASYVWGYV 305
S F+GI+ +S++WGYV
Sbjct: 157 SSSFLGIVQSSFLWGYV 173
>03_05_0378 -
23619169-23619225,23619389-23619454,23620052-23620224,
23620454-23620664,23621056-23621280,23622157-23622493,
23624200-23624627
Length = 498
Score = 26.6 bits (56), Expect = 7.3
Identities = 17/55 (30%), Positives = 20/55 (36%)
Frame = +3
Query: 96 SS*QNW*RHLQRAPGVDQLADTPGNRHGSFWIHPGSDSGLRPPLDCRPKGHSNSL 260
SS Q+W + G D A N W G+RP R G NSL
Sbjct: 411 SSAQSWVSAIAARRGSDLAASGAANGSVRLWAIEPDSKGIRPLFSLRLDGFVNSL 465
>02_01_0377 +
2728892-2729187,2729483-2729544,2730516-2730570,
2730784-2730858,2730980-2731054,2731155-2731202,
2731548-2732357,2732450-2732498,2733157-2733266,
2733381-2733488,2733920-2733980
Length = 582
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = -1
Query: 237 GDSQVEVAGRCHYQGESKKIHADSQEYQRAGQHQEHVVSAVTSFVKSFFECH 82
G S G Y+ ++K+ D + ++QE+ S +TS + +F+ H
Sbjct: 132 GQSNTRRKGLMTYKQFTQKLEDDVSPGEAESRYQEYKTSYITSQKQDYFDHH 183
>11_01_0207 -
1620192-1620280,1620408-1620451,1620703-1620791,
1620870-1620914,1621441-1621548,1621638-1621723,
1622202-1622289,1622403-1622576,1623084-1623159,
1623256-1623305,1623392-1623454,1623689-1623791,
1623871-1623973,1624679-1624739,1624864-1624904,
1625076-1625154
Length = 432
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 267 VGIILASYVWGYVSDTKGRRFTLVIPLLISFALNCISSLA-NHWL 398
+G AS WG V+D GR+ + +L N + L+ +W+
Sbjct: 66 IGRCFASLFWGVVADRIGRKPIIKFSILSVVIFNTLFGLSVKYWM 110
>10_08_0058 + 14521922-14522779
Length = 285
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 138 GVDQLADTPGNRHGSFWI 191
GV QLAD RHG+ W+
Sbjct: 268 GVPQLADESEGRHGNRWV 285
>07_01_0448 - 3383706-3384761
Length = 351
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 147 QLADTPGNRHGSFWIHPGSDS 209
+LA+ G HG F + PGSD+
Sbjct: 311 ELAEFAGEHHGFFTLGPGSDA 331
>05_07_0183 + 28251548-28252009,28252172-28252594
Length = 294
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 292 CGATYQIRRAEGSP*LF 342
C AT Q++RA+G P LF
Sbjct: 156 CNATKQVQRADGDPLLF 172
>05_03_0227 +
10655204-10655269,10656333-10656393,10656570-10656672,
10656768-10656870,10656951-10657004,10657124-10657186,
10657884-10658105,10658249-10658336,10658561-10658646,
10659003-10659110,10659201-10659245,10659511-10659601,
10659662-10659765
Length = 397
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 264 FVGIILASYVWGYVSDTKGRRFTLVIPLLISFALNCISSLA-NHWL 398
F+ +S WG +D GR+ +VI +L N + L+ +W+
Sbjct: 47 FLARTFSSVPWGIFADKYGRKPCIVISILSVIFFNTLFGLSTRYWM 92
>03_01_0256 - 1992298-1993878
Length = 526
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 252 NSLPFVGIILASYVWGYVSDTKGRRFTLVIPLLISFALNCISSLA 386
N + FVG + +G++ D GR+ + LL+ + S L+
Sbjct: 74 NGVAFVGTLTGQLFFGWLGDRVGRKSVYGMTLLLMIICSVASGLS 118
>02_05_0628 - 30466535-30468001
Length = 488
Score = 26.2 bits (55), Expect = 9.7
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Frame = -1
Query: 321 GPSYLIRSPTRKKQG*YQ------QKVES*NALL--GDSQVEVAGRCHYQGESKKIHADS 166
G SY++ S T + G ++ +K+E + G S +E+ GR H + K+H +S
Sbjct: 400 GSSYVLLSNTYARAGQWEDLKRTRRKMEEYGVMKQPGLSWIELDGRVHSFVSADKLHTES 459
Query: 165 QE-YQRAGQHQEHVVSA 118
++ YQ + ++VSA
Sbjct: 460 EDIYQMLEDLKVNLVSA 476
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,027,175
Number of Sequences: 37544
Number of extensions: 225648
Number of successful extensions: 624
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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