Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0431.Seq
(402 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.087
SB_59775| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3e-08) 32 0.15
SB_1462| Best HMM Match : MFS_1 (HMM E-Value=0.042) 31 0.27
SB_18704| Best HMM Match : MFS_1 (HMM E-Value=0.034) 31 0.27
SB_58285| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_31704| Best HMM Match : MFS_1 (HMM E-Value=0.024) 30 0.81
SB_28173| Best HMM Match : Sugar_tr (HMM E-Value=0.022) 30 0.81
SB_35860| Best HMM Match : Sugar_tr (HMM E-Value=1e-04) 29 1.1
SB_17379| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_53613| Best HMM Match : Sugar_tr (HMM E-Value=0.00012) 29 1.9
SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 1.9
SB_11070| Best HMM Match : Sugar_tr (HMM E-Value=0.00011) 28 3.3
SB_896| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_55040| Best HMM Match : TatC (HMM E-Value=0.59) 28 3.3
SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 28 3.3
SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036) 27 4.3
SB_58306| Best HMM Match : Sugar_tr (HMM E-Value=2.6e-05) 27 5.7
SB_37752| Best HMM Match : MFS_1 (HMM E-Value=0.11) 27 5.7
SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07) 27 7.6
SB_22497| Best HMM Match : Ras (HMM E-Value=7.7e-07) 26 10.0
SB_12617| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 10.0
>SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1892
Score = 33.1 bits (72), Expect = 0.087
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = -2
Query: 119 PLPVLLRASSNATDPSSAAELS----DIFTNNFNGTRDTSDYN 3
P PVLLR + T PS++ E + D TNN N T D +D N
Sbjct: 1755 PTPVLLRQNLPKTHPSNSLEKNSRTCDSHTNNVNQTSDVTDNN 1797
>SB_59775| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3e-08)
Length = 1381
Score = 32.3 bits (70), Expect = 0.15
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -1
Query: 294 TRKKQG*YQQKVES*NALLGDSQVEVAGRCHYQGESKKIHAD-SQEYQRAGQHQEHVVSA 118
T +Q Y + + ALL D +EV + ++H S+E+QRA H VV+A
Sbjct: 1161 TNPRQTRYVDEAKDFFALLLDDHIEVTDVLIVNDDMLQVHYKMSEEFQRAKPHTSVVVAA 1220
Query: 117 VTS 109
VT+
Sbjct: 1221 VTT 1223
>SB_1462| Best HMM Match : MFS_1 (HMM E-Value=0.042)
Length = 277
Score = 31.5 bits (68), Expect = 0.27
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 255 SLPFVGIILASYVWGYVSDTKGRRFTLVIPLLISFA 362
S+ FVG + S++ G VSD GR+ TL + + + A
Sbjct: 150 SMYFVGYLFGSFLSGTVSDAFGRKITLTVSVALQAA 185
>SB_18704| Best HMM Match : MFS_1 (HMM E-Value=0.034)
Length = 363
Score = 31.5 bits (68), Expect = 0.27
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 255 SLPFVGIILASYVWGYVSDTKGRRFTLVIPLLISFA 362
S+ FVG + S++ G VSD GR+ TL + + + A
Sbjct: 153 SMYFVGYLFGSFLSGTVSDAFGRKITLTVSVALQAA 188
>SB_58285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 547
Score = 30.7 bits (66), Expect = 0.46
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 240 KGHSNSLPFVGIILASYVWGYVSDTKGRRFTLVIPLLISFALNCISSLAN-HWL 398
+G S+S+ F G +L + G++SD GRR+ + L A +S+L+ WL
Sbjct: 106 QGVSSSVIFAGWLLGAIFIGWLSDRTGRRYVVYFGSLGLLAAAVVSALSPFFWL 159
>SB_31704| Best HMM Match : MFS_1 (HMM E-Value=0.024)
Length = 625
Score = 29.9 bits (64), Expect = 0.81
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Frame = +3
Query: 255 SLPFVGIILASYVWGYVSDTKGRR-------FTLVIPLLISFALNCISSL 383
S+ F G+++ S+V G VSD GR+ TL++ +S ++C+S L
Sbjct: 93 SMFFAGMLVGSFVSGPVSDIYGRKCCSFVFTATLILGAAVSVVVDCVSFL 142
>SB_28173| Best HMM Match : Sugar_tr (HMM E-Value=0.022)
Length = 453
Score = 29.9 bits (64), Expect = 0.81
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
Frame = +3
Query: 264 FVGIILASYVWGYVSDTKGRRFTLV----IPLLISFA---LNCISSLA 386
F G+++ S V G+ SD GRR L+ I L++SF +C+S LA
Sbjct: 123 FAGMLVGSMVGGWASDRFGRRLCLLVGSAIMLILSFGTAFADCLSLLA 170
>SB_35860| Best HMM Match : Sugar_tr (HMM E-Value=1e-04)
Length = 544
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 249 SNSLPFVGIILASYVWGYVSDTKGRRFTLVI-PLLISFALNCISSLANHWL 398
+NS+ F G + + V+G +SD GRR L I ++ + S + +WL
Sbjct: 96 TNSIMFTGWLFGNIVFGILSDKYGRRKVLFISSCMVCWVAFASSFVPYYWL 146
>SB_17379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 29.5 bits (63), Expect = 1.1
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -1
Query: 294 TRKKQG*YQQKVES*NALLGDSQVEV-AGRCHYQGESKKIHADS-QEYQRAGQHQEHVVS 121
T +K G + + E ALL S V++ A + ++ G + K ADS + QH ++
Sbjct: 135 TNRKNGAFSKNPEF-CALLSISPVKLRAPKANHSGSALK-EADSLPRLRNIAQHSVEIIR 192
Query: 120 AVTSFVKSFFEC 85
+TS V F+ C
Sbjct: 193 EMTSIVPLFYRC 204
>SB_53613| Best HMM Match : Sugar_tr (HMM E-Value=0.00012)
Length = 466
Score = 28.7 bits (61), Expect = 1.9
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 255 SLPFVGIILASYVWGYVSDTKGRRFTLVIPLLISFALNCISSLAN 389
S+ F+G++ S++ G VSD GR+ L + I A S+L +
Sbjct: 115 SVYFIGMLFGSFLTGMVSDAWGRKNCLFLFTGIMLAAGVASALVD 159
>SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 618
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 210 RCHYQGESKKIHADSQEYQRAGQHQEHVV 124
+C E K H+ SQEY+RA H+E V+
Sbjct: 157 KCSRDAEIKSFHSYSQEYERA--HREDVI 183
>SB_11070| Best HMM Match : Sugar_tr (HMM E-Value=0.00011)
Length = 468
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 264 FVGIILASYVWGYVSDTKGRRFTLVI 341
F G+++ S V G+ SD GRR L++
Sbjct: 122 FAGMLIGSLVGGWASDRFGRRLCLLV 147
>SB_896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 968
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 264 FVGIILASYVWGYVSDTKGRRFTLVI 341
F G+++ S V G+ SD GRR L++
Sbjct: 635 FAGMLIGSLVGGWASDRFGRRLCLLV 660
>SB_55040| Best HMM Match : TatC (HMM E-Value=0.59)
Length = 275
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +3
Query: 264 FVGIILASYVWGYVSDTKGRR--FTLVIPLLISFALNCI 374
F G+++ S V G +SD GR+ F L L++ ++C+
Sbjct: 119 FAGMLIGSLVSGLISDAWGRKKCFYLSYALMVVAGVSCV 157
>SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 716
Score = 27.9 bits (59), Expect = 3.3
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 237 PKGHSNSLPFVGIILASYVWGYVSDTKGRRFTLVIPLLISFAL 365
PKG S SLP + L S++ V+ G R +LVI L++ +
Sbjct: 308 PKGFSTSLPSFVLSLLSFI---VTTESGERISLVITNLLALTV 347
>SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 956
Score = 27.9 bits (59), Expect = 3.3
Identities = 18/72 (25%), Positives = 33/72 (45%)
Frame = -2
Query: 218 SQAAVTTRVNPKRSMPIPRSISELVNTRSTL*VPLPVLLRASSNATDPSSAAELSDIFTN 39
S + T V + + P S + L+ ++ VP P L + + T P+ ++ S TN
Sbjct: 337 SSSFATNLVGQQTASSTP-STTSLLGQQAVSSVPFPTNLLSQPSITSPAVSSSSSQPVTN 395
Query: 38 NFNGTRDTSDYN 3
F T+ ++ N
Sbjct: 396 LFGPTQSSASSN 407
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 27.5 bits (58), Expect = 4.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 186 WIHPGSDSGLRPPLDCRPKGHSNS 257
W D+G + P DC P+GH S
Sbjct: 1091 WYRITGDAGNQMPTDCVPRGHCGS 1114
>SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036)
Length = 1336
Score = 27.5 bits (58), Expect = 4.3
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -1
Query: 246 ALLGDSQVEVAGRCHYQGESKKIHAD-SQEYQRAGQHQEHVVSAVTS 109
ALL D +EV + ++H S+E+QRA + V++AVT+
Sbjct: 1132 ALLLDDHIEVTDVLIVNDDMLQVHYKMSEEFQRAKPYTSVVIAAVTT 1178
>SB_58306| Best HMM Match : Sugar_tr (HMM E-Value=2.6e-05)
Length = 457
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 264 FVGIILASYVWGYVSDTKGRRFTLVI 341
FVG+++ S V G +SD GR+ L I
Sbjct: 84 FVGMLIGSLVCGVISDAWGRKKCLFI 109
>SB_37752| Best HMM Match : MFS_1 (HMM E-Value=0.11)
Length = 302
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 255 SLPFVGIILASYVWGYVSDTKGRRFTLVIPLLISFA 362
S+ FVG + S + G +SD GR+ +L + + + A
Sbjct: 59 SMYFVGYLFGSLLSGTLSDAFGRKISLTVSVALQAA 94
>SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07)
Length = 1844
Score = 26.6 bits (56), Expect = 7.6
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = +3
Query: 162 PGNRHGSFWIHPGSDSGLRPPLDCRPKGHSNSL 260
PGNR GS PG+ SG PL RP S L
Sbjct: 477 PGNRTGSSGSRPGNGSG---PLGKRPGNGSGPL 506
>SB_22497| Best HMM Match : Ras (HMM E-Value=7.7e-07)
Length = 769
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -1
Query: 246 ALLGDSQVEVAGRCHYQGESKKIHADSQEYQRAGQHQEH 130
A+ Q+ +G+ H E K +DS++ + +H+EH
Sbjct: 655 AMFMSEQLSTSGKKHSTKEPKDDGSDSEKEAKVKRHKEH 693
>SB_12617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -1
Query: 246 ALLGDSQVEVAGRCHYQGESKKIHADSQEYQRAGQHQEH 130
A+ Q+ +G+ H E K +DS++ + +H+EH
Sbjct: 23 AMFMSEQLSTSGKKHSTKEPKDDGSDSEKEAKVKRHKEH 61
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,424,356
Number of Sequences: 59808
Number of extensions: 259243
Number of successful extensions: 573
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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